Gene Information

Name : Varpa_4196 (Varpa_4196)
Accession : YP_004156477.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Unknown
Product : cobalamin synthesis protein p47k
Function : -
COG functional category : R : General function prediction only
COG ID : COG0523
EC number : -
Position : 4526916 - 4528109 bp
Length : 1194 bp
Strand : -
Note : PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dac:Daci_3649 cobalamin synthesis protein P47K

DNA sequence :
ATGACCCATCGCCTCCCCGTCACCGTCCTCTCAGGCTTTCTCGGTGCGGGCAAGACCACCTTGCTCAACCACATCCTCCA
CAACCGCGAGGGGCGCCGCGTGGCGGTGATCGTCAACGACATGAGCGAGGTCAACATCGACGCGGCGCTCGTGCGCGACG
GCGGCGCGCAGCTCTCGCGCACCGACGAGAAGCTGGTCGAAATGAGCAACGGCTGCATCTGCTGCACGCTGCGCGAAGAC
CTGCTGATCGAGGTGAACCGCCTCGCGAAGGAGGGCCGCTTCGACCAACTGGTGATCGAGTCCACCGGCATCTCCGAGCC
CCTGCCCGTGGCCGAGACCTTCACCTTCGCGGGCGAGGACGGCAAGAGCCTGGCCGACGTGGCGCGGCTGGACACCATGG
TGACGGTGGTCGATGCCTTCAACTTCCTGCGCGACTACGGCTCGCCCGACAGCCTGGGCCAGCGAGGCCAGTCGCTGGGC
GACGAGGACACGCGCACGGTGGTCGACCTGCTGATCGAGCAGATCGAGTTCTGCGATGTGCTGGTGGTCAACAAGACCGA
CCTCGTCACGCCCGAGGAGCGCGAGCGCCTGATGGCGATCTTGCAGAGCCTGAATCCGCGTGCGCGCATCGAGGTGTCGC
AGTTCGGCCGCGTCGCACTCGACCGGGTGCTCGACACCGGTCTTTTCGATTTCGAGCAGGCGGAGCAGGCGCCGGGCTGG
CTGGCCGAGCTGCGCGGCGAGCATGTGCCCGAGAGCGAGGCATACGGCATCCGCAGCTTTGTCTATCGCTCGCGCCTGCC
GTTCCATCCGAAGCGCTTCTGGGACCTGGTGCAAAGCGAGTGGGAGGGCGTGGTGCGCTCCAAGGGCTTCTTCTGGCTCG
CGAGCCGTGCCACGCGTGCCGGTTCGTGGTCGCAGGCCGGTGGCGCCTGCCGTTACGGCGCGGCGGGATTCTGGTGGGCG
GCGGTGCCGCGGGAGCACTGGCCGACCGAGCCGGATGCGCTGGAGACGATCCAGAAGAACTGGGATCCGGCAACCGGCGA
TGCGCGTCAGGAGCTGGTGCTCATCGGCATCGGCATGGACGAGGCCGCATTGCGTGCGCGGCTGGATGCGTGCCTGCTCA
CCGAAAACGAGATGCGCTTCGGCGCCTCGTGGTGGCAGAACCTGCCCGATCCGTTCCCGTCCTGGAACGTCTGA

Protein sequence :
MTHRLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGAQLSRTDEKLVEMSNGCICCTLRED
LLIEVNRLAKEGRFDQLVIESTGISEPLPVAETFTFAGEDGKSLADVARLDTMVTVVDAFNFLRDYGSPDSLGQRGQSLG
DEDTRTVVDLLIEQIEFCDVLVVNKTDLVTPEERERLMAILQSLNPRARIEVSQFGRVALDRVLDTGLFDFEQAEQAPGW
LAELRGEHVPESEAYGIRSFVYRSRLPFHPKRFWDLVQSEWEGVVRSKGFFWLASRATRAGSWSQAGGACRYGAAGFWWA
AVPREHWPTEPDALETIQKNWDPATGDARQELVLIGIGMDEAALRARLDACLLTENEMRFGASWWQNLPDPFPSWNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0450 YP_039898.1 cobalamin synthesis protein Not tested vSa¥á Protein 8e-92 53
SAS0408 YP_042534.1 cobalamin synthesis protein Not tested vSa¥á Protein 2e-91 53