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Name : Varpa_4134 (Varpa_4134) Accession : YP_004156415.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein muts Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 4461106 - 4463763 bp Length : 2658 bp Strand : + Note : SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; manually curated; KEGG: vap:Vapar_3589 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; Mut DNA sequence : GTGAAAACGACGACTGCTCAACCCATTTCCCCCACCAGCGACCTCTCCGGGCACACGCCCATGATGGCGCAGTACCTGGG CCTCAAGGCGGACCATCCGGACACCCTGCTCTTCTACCGGATGGGCGATTTCTACGAACTGTTCTGGGCCGATGCCGAAA AGGCCGCGCGCTTGCTCGACATCACCCTCACCCAGCGCGGCCAGTCGGCCGGCCAGCCCGTGGTGATGTGCGGCGTGCCT TTCCATGCGGTCGATACGTACCTCGCGCGGCTCATCAAGCTGGGCGAATCGGTGGCCATCTGCGAGCAGGTGGGCGAGGT CGGCGCGAGCAAGGGGCCGGTGGAGCGCAAGGTGATGCGCGTGGTCACGCCCGGCACGCTGACCGATTCGGAACTGCTCA GCGACAAGAGCGAATCGCTGTTGCTCGCGGTGCATGCGGGCACGCGCAATTTCTGCGGGCTCGCGTGGCTCAGCGTGACG GGTGCCGAACTGCGGCTGGCCGAGTGCCCGGCCGATGCGCTCGAAGCGTGGATCGCGCGCATCGCGCCGAGCGAACTGCT CTACAGCGCCGAGGTGACGCCGGCTTTCGAGCAACGCCTGAAAGCCGCTCGCACCGCAACGCCGTTCACCCTCTCGATTC GCCCCGCGTGGCAGTTCGACGGAGGCCTGGGCGAGCGCAAGCTCAGCGAGCAGATGGGCAGCAACAGCCTGGCCGCGTGG AACGCCGAATCGCTCACCAATGCGCATGCCGCGGCGGCCGCGCTGCTGGGCTATGCCGAACACACGCAGGGCCGCGCGCT TTCGCACGTGCAGCGGCTGTCTGTCGAGCGCGACGGCGACCTGATCGAGCTGCCGCCCACCACGCGGCGCAACCTCGAAC TGGTGCAGACGCTGCGCGGCGAAGACTCGCCCACGATGTTCTCGCTGCTCGACACCTGCATGACGGGCATGGGCAGCCGG CTCGTGAAGCGCTGGCTGCTGTCGCCACGTCGTGACCGCAGTGAAGCGCAGGCGCGGCTCGAGGCGATCGCCGCGCTGCA GTCCACCGTGCTCGGCGGTACTGCCGCGCCATGGCGCACGCTGCGGGAGCAACTGAAGAACACGAGCGACGTCGAGCGCA TTGCGGCGCGCATCGCGCTGCGCCAGGTGCGTCCGCGCGAGTTGCTGGCGCTGCGCCTGGCGCTCGACAAGGCCGAGCAA CTGGCACCGCTGCTGCCTGCTTCCGCTCCGTTGCTGACACGCATCGCCGAGCGGCTCGCGCCGCCGCCGGGCTGCGCCGA TCTGCTGGTGAGCGCGATCAAGCCCGACCCGTCGGCGCTGGTGCGCGACGGCGGCGTGATCGCGACCGGCCACGACGCCG AGCTCGACGAGCTGCGCGCCATCAGCGACAACTGCGACGACTTTCTGCTGAAGCTCGAAATCAGCGAACGCGAGCGCACC GGCATCAGCAACCTGCGGGTGCAGTTCAACCGGGTGCACGGCTTCTACATCGAGGTGACGCAAAGCGCGCTCTCGAAGGT GCCCGACAACTACCGCCGCCGCCAGACGCTGAAGAACGCCGAGCGCTTCATCACGCCCGAGCTGAAGGCTTTCGAAGACA AGGCGCTGAGCGCGCAAGACCGCGCGCTGGCCCGCGAGAAGTGGCTCTACGAGCAGCTGCTCGATGCACTGCAGCCCTCG GTGCATGCGCTCACGCAACTGGCCGGCGGCATCGCGACGCTCGATGCGCTGTGCGCGCTGGCCGAGCGCTCGCACACGCT GCACTGGCGCGCACCGACCTTCGTGTCGCACCCGTGCATCGAGATCCAGCAGGGGCGGCATCCGGTGGTGGAAGCGCGCC TCGCCGAAAAGTCGTCGGGCGGCTTCATCGCCAACGACACGCAGCTCGGACCGCAGCAGCGCATGCAGGTCATCACCGGC CCGAACATGGGCGGTAAGTCGACGTACATGCGGCAGGTGGCGATCATCGTGCTGCTCGCCTCCATCGGCTCGCACGTGCC GGCGGCGGCCTGCCGGCTCGGGCCGATCGATGCGATCCACACGCGCATCGGCGCGGCGGACGACCTGGCGAATGCGCAGT CGACCTTCATGCTGGAGATGACCGAGGCCGCGCAGATCCTGCACAGTGCCACCGCGCAATCGCTGGTGCTGATGGACGAA ATCGGCCGCGGCACCAGCACCTTCGACGGGCTGGCGCTGGCCGCGGGCATCGCGGCGCAGCTGCACGACCGCAGCAAGGC CTTCACGCTGTTCGCGACCCACTACTTCGAGCTGACCGAGTTTCCGGCCACGCACCACGGCGCGGTGAACATGCATGTGA GCGCGACCGAGGCAGGCCGCGACATCGTGTTCCTGCACGAAATGCAGCCCGGCCCGGCCAGCAAGAGCTACGGTATTCAA GTCGCGCGGCTTGCCGGCATGCCGGCGGCCGTGGTCAACCATGCGCGGCAGGCGCTCGAAGCACTCGAATCGCAGCATGC GCAGACGCGTGCACAGGTCGACCTGTTCGCGCCCCCTCCGGTGGCCGAGACGCCGCTGGCCAGCGCCGTAGAATCCGCGC TGGCCGCGCTAGACCCCGACACCATGAGCCCGCGCGAGGCCCTCGACGCGCTCTATGCCCTCCAAAAACTGAACACGCGT GAACGCAGTGCCGCCTGA Protein sequence : MKTTTAQPISPTSDLSGHTPMMAQYLGLKADHPDTLLFYRMGDFYELFWADAEKAARLLDITLTQRGQSAGQPVVMCGVP FHAVDTYLARLIKLGESVAICEQVGEVGASKGPVERKVMRVVTPGTLTDSELLSDKSESLLLAVHAGTRNFCGLAWLSVT GAELRLAECPADALEAWIARIAPSELLYSAEVTPAFEQRLKAARTATPFTLSIRPAWQFDGGLGERKLSEQMGSNSLAAW NAESLTNAHAAAAALLGYAEHTQGRALSHVQRLSVERDGDLIELPPTTRRNLELVQTLRGEDSPTMFSLLDTCMTGMGSR LVKRWLLSPRRDRSEAQARLEAIAALQSTVLGGTAAPWRTLREQLKNTSDVERIAARIALRQVRPRELLALRLALDKAEQ LAPLLPASAPLLTRIAERLAPPPGCADLLVSAIKPDPSALVRDGGVIATGHDAELDELRAISDNCDDFLLKLEISERERT GISNLRVQFNRVHGFYIEVTQSALSKVPDNYRRRQTLKNAERFITPELKAFEDKALSAQDRALAREKWLYEQLLDALQPS VHALTQLAGGIATLDALCALAERSHTLHWRAPTFVSHPCIEIQQGRHPVVEARLAEKSSGGFIANDTQLGPQQRMQVITG PNMGGKSTYMRQVAIIVLLASIGSHVPAAACRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAQILHSATAQSLVLMDE IGRGTSTFDGLALAAGIAAQLHDRSKAFTLFATHYFELTEFPATHHGAVNMHVSATEAGRDIVFLHEMQPGPASKSYGIQ VARLAGMPAAVVNHARQALEALESQHAQTRAQVDLFAPPPVAETPLASAVESALAALDPDTMSPREALDALYALQKLNTR ERSAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 6e-157 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4134 | YP_004156415.1 | DNA mismatch repair protein muts | VFG0562 | Protein | 5e-166 | 49 |
