Gene Information

Name : Varpa_4095 (Varpa_4095)
Accession : YP_004156377.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : MerR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 4420567 - 4421040 bp
Length : 474 bp
Strand : +
Note : TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: vap:Vapar_3563 transcriptional regulator MerR family; SMART: regulatory protein MerR

DNA sequence : 
ATGAAAATCGGTGAACTCGCCAAGGCCGCGAACACGCCGGTCGAAACCATCCGGTATTACGAGCGCGAGCAGTTGCTGCC
CGAGCCCGCGCGCACCGACGGCAACTACCGCATCTACGACGACGAACACGCCCAGCGCCTGGGCTTCATCCGGCGCTGCC
GCTCGCTGGACATGACGCTCGACGAGATCCGCAGCCTGCTGAAATTCCGCGATGCGCCGCAGGACGACTGCGGCGAGGTC
AACCAGCTGCTGGACGACCACATCGGCCACGTCGCCGCTCGCATCGCGGAACTGAAGACCCTCGAAAAGCAATTGAAGGC
GCTGCGCCTGCAATGCTGCGGGCCAGAGTCCGCGAATGCCTGCGGCATCCTGCAGGAACTGGACACCGCCGCGCTCGCGC
CGGAGACCTTCGGGCAGCACGCGGGGCATGTGCATGGGTCGCTGCACAACACGTCGGGGAAGCGGTCGGGTTGA

Protein sequence : 
MKIGELAKAANTPVETIRYYEREQLLPEPARTDGNYRIYDDEHAQRLGFIRRCRSLDMTLDEIRSLLKFRDAPQDDCGEV
NQLLDDHIGHVAARIAELKTLEKQLKALRLQCCGPESANACGILQELDTAALAPETFGQHAGHVHGSLHNTSGKRSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 1e-34 55
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 2e-34 46
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-34 46
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 1e-34 46
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-34 46
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 1e-34 46
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 1e-34 46
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 1e-34 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_4095 YP_004156377.1 MerR family transcriptional regulator BAC0058 Protein 2e-41 62
Varpa_4095 YP_004156377.1 MerR family transcriptional regulator BAC0301 Protein 1e-35 60
Varpa_4095 YP_004156377.1 MerR family transcriptional regulator BAC0462 Protein 5e-26 41