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Name : Varpa_4094 (Varpa_4094) Accession : YP_004156376.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Resistance Product : heavy metal translocating p-type ATPase Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2217 EC number : - Position : 4418202 - 4420496 bp Length : 2295 bp Strand : - Note : KEGG: vap:Vapar_3562 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein DNA sequence : ATGCCGAACCAGAACGCCCTGAAGCCCGTGACGCCGGCTCTGCCTCACGACCACGACCATGGTGACGATCACTCGCACGG ACCTGCGCACACCCACGCTCATGCCCATGCCGAAACGGCCTGCTGCGGCAACCCGGTCTGCGGTTCGTCACCCGCGGTGG ACACCACCGACATTCCCAAGGGCGCCTTGCTCTTTCGCATTCCCACGATGGACTGCGCGGTCGAGGAATCCGAAATCCGC CGCGCCCTCGAACCGGTGGCCGGCATCCAGGGCCTGCGCTTTCGCCTCGGCGAGCGCACGATGGCCATCACGGCCGACGA TGGCGCGCTGCCCCAGGCGCTCGATGCGATCCGCAAGGCCGGCTTCAAGCCCGAGCCTGTCGGCGACACGGCTGCCCCGG CCGCCCCTGCACGCATCGCGGGAATGAGCGCCGGCCTCGCGCGCCTCGTCGCCGCACTGGTGCTGGCCATCGCGGCCGAA TCGATCTCCTTCCTGGCCCTCGACGGCAAGGGCTTCATGGCCGCCGAGATGGTGCTCGCGCTCGCGGCCATTGGCCTGGC CGGCCTCGACACCTACAAGAAGGGCTTCGGCGCGCTGGTGCGCGGGCGTCTCAACATCAACGCGCTGATGGCCGTTGCCG TGACTGGCGCCTTCGTCATCGGCCAGTGGCCCGAGGCGGCGATGGTGATGGCGCTCTATGCGATTGCCGAGCTGATCGAA GCCCGCGCCGTCGACCGCGCCCGCAACGCGATCCAGAGCCTGCTCGCGCTCGCGCCTGAGCAGGCTGAAGTCAAGCAACC CGATGGCAGTTGGCAGACCATGAGGGCCGACGCCGTGGCGCTCGATGCCGTCGCACGCATTCGCCCCGGCGAGCGCGTGC CGCTCGATGGCGTGGTGACCGCGGGCCTGAGCGCCATCGACCAGGCGCCGGTCACGGGCGAGAGCATCCCGGTCGACAAG ACCGTGGGCGACCCGGTCTTCGCGGGCACCATCAACCAGACCGCCGCGCTGGAATTCCGTGTCACGGCGGTGGCGGCCAA CACCACGCTCGCGCGCATCATCCACGCGGTCGAAGAGGCGCAGGGCACGCGCGCGCCCACGCAGCGTTTCGTCGACCGTT TCGCTGCCATCTACACGCCCGCGGTCTTCGTGCTGGCGTTGGCGATCGCGCTGTTCACGCCGCTCTTCATGGACTGGACC TGGCTGCAGGCCATCTACAAGGCGCTGGTGCTGCTTGTCATCGCCTGCCCGTGTGCGCTGGTGATCTCGACGCCCGTCAC GGTCGTGAGCGCGCTCGCATCGGCCGCGCGGCGCGGCATCCTCATCAAGGGCGGCACGTACCTCGAAGAGGCACGCAAGC TGAAGGCCGTGGCGCTCGACAAGACGGGCACCATCACCGAAGGCAAGCCGAAGCTGGTCGAGTCCAGCCTGCTCGATGCA TCGGGCAGCAATGAAGCGGCGGTGTTCGCGATCGCCGCGAGCATCGCGGGCCGCTCGGACCATCCCGTGTCGAAGGCCAT CGCCGAGGGCCTGAAGGGCGAGCGCGAAGAAGTCGGCGACTTCACCGCGTTGCCGGGTCGCGGCGTGCAGGCCGTGCTTT CGGGCCAGAGCTACATGCTCGGCAACCATCGGCTGATCGAAGAGAAGGGCTTGTGCACTCCGGCACTCGAAGCCGAACTC AAGCGCCATGAGGAGGCGGGCCGCACCGTGACCCTGCTTGCATCGAGTCGGGCCGTGCTCGCGCTGTTCGCTGTCGCCGA CACGATCAAGGAATCGTCGCAAGCCGCGGTGGCCGAACTGCGCGCCCTCGGCGTCGTGCCCGTGATGCTCACCGGCGACA ACGCCGCCACGGCCAGGACCATCGGTGGCCACGCCGGCATCGAGGACGTGCGCGGCAACCTGCTGCCCGAAGAGAAGCTC GGCGCCATCAAGGCGATGCAGGAACGCTACGGCGCGGTGGCGATGACCGGCGACGGCATCAACGACGCGCCGGCGCTCGC GCAGGCCGACATCGGTTTCGCCATGGGCGGCGCGGGCACCGACACCGCGATGGAAGCGGCCGACGTGGTCATCATGAACG ACGACCTGCGCCGCATTCCCGAGACCATCCGCCTCTCGCGCCGCGCGCACGCGGTGCTGTGGCAGAACATCACGCTGGCA CTCGGCATCAAGGGCATCTTCTTCGTGCTCGCGGTGTTCGGCAGCGCGACGATGTGGATGGCGGTGTTCGCGGACATGGG CGCGAGCCTTCTGGTGGTGGCGAACGGGCTGCGGCTGATGCGGGCGCCCAAGTAG Protein sequence : MPNQNALKPVTPALPHDHDHGDDHSHGPAHTHAHAHAETACCGNPVCGSSPAVDTTDIPKGALLFRIPTMDCAVEESEIR RALEPVAGIQGLRFRLGERTMAITADDGALPQALDAIRKAGFKPEPVGDTAAPAAPARIAGMSAGLARLVAALVLAIAAE SISFLALDGKGFMAAEMVLALAAIGLAGLDTYKKGFGALVRGRLNINALMAVAVTGAFVIGQWPEAAMVMALYAIAELIE ARAVDRARNAIQSLLALAPEQAEVKQPDGSWQTMRADAVALDAVARIRPGERVPLDGVVTAGLSAIDQAPVTGESIPVDK TVGDPVFAGTINQTAALEFRVTAVAANTTLARIIHAVEEAQGTRAPTQRFVDRFAAIYTPAVFVLALAIALFTPLFMDWT WLQAIYKALVLLVIACPCALVISTPVTVVSALASAARRGILIKGGTYLEEARKLKAVALDKTGTITEGKPKLVESSLLDA SGSNEAAVFAIAASIAGRSDHPVSKAIAEGLKGEREEVGDFTALPGRGVQAVLSGQSYMLGNHRLIEEKGLCTPALEAEL KRHEEAGRTVTLLASSRAVLALFAVADTIKESSQAAVAELRALGVVPVMLTGDNAATARTIGGHAGIEDVRGNLLPEEKL GAIKAMQERYGAVAMTGDGINDAPALAQADIGFAMGGAGTDTAMEAADVVIMNDDLRRIPETIRLSRRAHAVLWQNITLA LGIKGIFFVLAVFGSATMWMAVFADMGASLLVVANGLRLMRAPK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | BAC57487.1 | Probable cadmium-transporting ATPase (Cadmium efflux ATPase) | Not tested | Type-IIIinv SCCmec | Protein | 1e-117 | 45 |
| unnamed | BAB47609.1 | cadmium resistance protein B | Not tested | Type-III SCCmec | Protein | 1e-117 | 45 |
| SE0075 | NP_763630.1 | cadmium resistance protein B | Not tested | SCCpbp4 | Protein | 3e-117 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_4094 | YP_004156376.1 | heavy metal translocating p-type ATPase | BAC0298 | Protein | 4e-153 | 62 |
| Varpa_4094 | YP_004156376.1 | heavy metal translocating p-type ATPase | BAC0461 | Protein | 1e-79 | 41 |
