Gene Information

Name : Varpa_3983 (Varpa_3983)
Accession : YP_004156266.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4295599 - 4296252 bp
Length : 654 bp
Strand : +
Note : KEGG: vap:Vapar_3469 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACGCTGCGCATTTCCAACCTCGGCAAGCACTACGGCGAAGCGCCGGTCTTCGAAAACGTGACGCTGGATGTCCAGCC
CGGCGAGTTCGTCGCCATCGTGGGCGAGTCGGGCGTGGGCAAGTCGACGCTGCTCAACTGCATGGCAGGCCTCGACAGCT
GGGACCAGGGCACGGTGACGCACGACGGCACCGACATCGGCGCGCTCGACGGCGAGGCCTGCGCGCTCTGGCGACGCAAG
CACGTCGGCTTCGTGTTCCAGGCCTTCCATGTGCTGCCGCATCTCGACGTGGCGCAGAACATATCGCTGCCGCTGATGCT
GCTCGGCGAGAAGAAAAAAGACGATGGCCGCGTCGCGCACATGCTCGATGCGGTCGGCCTGCCCGGCATGGGTGCGCGGC
TGCCGCAGACGCTTTCGGGTGGTCAGTTGCAGCGCGTGGCGATTGCGCGCGCGCTGGTGCACCGGCCCGCGCTGCTGCTC
GCCGACGAGCCCACGGGCAACCTCGATCCGACCACGGCCGCGAAGGTGATGGAACTGCTGATCGGCCAGACCCGCGAGCA
CGGCGCCTCGCTGGTATTGGTGACGCACTCCGAAAGCGCCGCCGCCCGTGCGGACCGCCTGCTGCACCTGACGGCCGCAG
GCATCCGCGCCTGA

Protein sequence : 
MTLRISNLGKHYGEAPVFENVTLDVQPGEFVAIVGESGVGKSTLLNCMAGLDSWDQGTVTHDGTDIGALDGEACALWRRK
HVGFVFQAFHVLPHLDVAQNISLPLMLLGEKKKDDGRVAHMLDAVGLPGMGARLPQTLSGGQLQRVAIARALVHRPALLL
ADEPTGNLDPTTAAKVMELLIGQTREHGASLVLVTHSESAAARADRLLHLTAAGIRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 44
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 1e-20 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_3983 YP_004156266.1 ABC transporter NC_012469.1.7686878. Protein 2e-33 45
Varpa_3983 YP_004156266.1 ABC transporter CP001581.1.gene798.p Protein 4e-38 44
Varpa_3983 YP_004156266.1 ABC transporter NC_008702.1.4606598. Protein 3e-33 44
Varpa_3983 YP_004156266.1 ABC transporter CP001581.1.gene598.p Protein 2e-38 41