|
Name : Varpa_3931 (Varpa_3931) Accession : YP_004156215.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : polypeptide-transport-associated domain-containing protein shlb-type Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG2831 EC number : - Position : 4231583 - 4233298 bp Length : 1716 bp Strand : - Note : PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: vap:Vapar_4522 polypeptide-transport-associated domain protein ShlB-type DNA sequence : ATGTTGGCCGGTGTGCTGTTGGGCGGTCCGTTGTGGGCGCAGGCCCAGGTTCCCAGCACTCCCCAACCCTTCGTCGAACA GCAACGCCAGCAGGAACGCGAACGCGCCCTGCGCGAGCAGAACGAGCGCACGGTTGATCAGCGCCTGCAAGCCGCGCTGC CTGCGCCTACCCAGCGCATCCCTGAATCCGAGTCGCCGTGCTTTCGGATCGACCGCGTATTGCTGGTTGGCGAGCAGGCC GAGGCCTTCCAGTGGGCTGTTGCTGATCTCTCCGGCCCCGAGGGCAACGATTCACCGCTGGGTCGATGCCTCGGAACCGC AGGCGTCAACGTGGTGCTCGCGCGCGCTCAGCAGGCGGCCATCGCGCGCGGGTTCGTCACCACGCGGGTGCTGACTGCGC CGCAGGATCTCTCGACCGGCACGCTGACCCTTTCGCTGATCCCGGGCCGCATCGCCGCGATCCGCCTGACGCCCGACTCT TCGTCCACGCTGCTCGGTAATTCCGCCTTGCTGACCACCGCAATTCCTGCGCGTGTTGGCGATCTACTGAACCTGCGCGA TATCGAGCAAGGCCTCGAGAACCTGAAGCGCGCTCCGACAGCCGAAGCCGACATCCAGATCGAGCCATCGACTGCGGTCG GTGCAAAACCCGGCGACAGCGATCTGGTCGTCAAGTACGTCCAGTCCAAGAAATGGCGCGTCACGCTGAGCCTCGACGAC AGCGGCACCAAGGCCACAGGCCGCAACCAAGCTGGCGCCACCGTCTCGCTCGACAACCCTTTCGGCCTGAACGACCTGTT CTACGTCAGCGCCAACCACAGCGTCAACAGCCACTTCCTGTCCGAGCCGAGCTATGGCACCGAAGGCCAGACGGCGCACT ACTCGCTGCCGTTCGGCTACTGGATGCTCGGCTTCACCGCCTCCAACAGCCAGTACCACCAGAGCGTCGCCGGCCTGAAC GGCGACATCGTCTATGCCGGCAAGACCAACAACGCCGAGGTCAAGCTCTCGCGCCTGCTCTACCGCGACCAGAGCCGCAA GACCACGGTGGCCGTCAAGGGCTGGCGTCGCGAGTCGCGCAACTTCGTGGACGACACCGAGGTCGAGGTGCAGCACCGCG TGGTCGGCGGCTGGGAATTCAGCCTGAACCACAAGGAGTTCATCGGCGAAGCGACGCTCGAAGGCACGCTGGCCTACAAG CGTGGCACCGGCGGCTTCGGCTCGCGCGTCGCGCCGGAAGAAGAGTTCGGCGAGGGCACCTCGCGCCTGAAGCTGTACAC GGCCGATGTCACCCTCAACGCGCCGTTCAAGCTCGGCGAGCAGAAGCTGCGCTACTCCGGCCTGATCCGCGCTCAATGGA ACCGCACGCCACTCACGCCACAGGACCGCTTCGCCATCGGCGGACGCTACACGGTGCGTGGCTTCGATGGCGAGACCAGC CTGTTGGGCGAACGCGGCATGCTGATCCGCAACGACATCGGTTGGGCGATGGGGCAGAGCGGGGCGGAGCTGTATGCAGG CATGGACTACGGCCATGTCGGTGGCCGCTCCACGGTCGACCTTCTCGGTCGCAGTTTGGCAGGCGCCGTCGTCGGCGTGC GAGGCCAGTGGAGCAGGCTGAGCTACGATTTTTTCGTTGGTGCTCCCATTCGCAAGCCCGAGGGCTATCGCACGGCCAAG GTCACATTGGGCTTCAACCTCAACGTAAGCTTCTAG Protein sequence : MLAGVLLGGPLWAQAQVPSTPQPFVEQQRQQERERALREQNERTVDQRLQAALPAPTQRIPESESPCFRIDRVLLVGEQA EAFQWAVADLSGPEGNDSPLGRCLGTAGVNVVLARAQQAAIARGFVTTRVLTAPQDLSTGTLTLSLIPGRIAAIRLTPDS SSTLLGNSALLTTAIPARVGDLLNLRDIEQGLENLKRAPTAEADIQIEPSTAVGAKPGDSDLVVKYVQSKKWRVTLSLDD SGTKATGRNQAGATVSLDNPFGLNDLFYVSANHSVNSHFLSEPSYGTEGQTAHYSLPFGYWMLGFTASNSQYHQSVAGLN GDIVYAGKTNNAEVKLSRLLYRDQSRKTTVAVKGWRRESRNFVDDTEVEVQHRVVGGWEFSLNHKEFIGEATLEGTLAYK RGTGGFGSRVAPEEEFGEGTSRLKLYTADVTLNAPFKLGEQKLRYSGLIRAQWNRTPLTPQDRFAIGGRYTVRGFDGETS LLGERGMLIRNDIGWAMGQSGAELYAGMDYGHVGGRSTVDLLGRSLAGAVVGVRGQWSRLSYDFFVGAPIRKPEGYRTAK VTLGFNLNVSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| S1 | AAQ19124.1 | putative hemolysin activator HlyB | Not tested | PAI I CL3 | Protein | 8e-101 | 46 |
| NMB1762 | NP_274762.1 | hemolysin activation protein HecB | Not tested | IHT-C | Protein | 3e-97 | 46 |
