Gene Information

Name : Varpa_3683 (Varpa_3683)
Accession : YP_004155978.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3973573 - 3974295 bp
Length : 723 bp
Strand : -
Note : KEGG: vap:Vapar_2206 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGTCCCAATCCCCGTCTGATGCCATTGTCGCCGTCGAGCATGTCTTCAAGTCCGTCACCGATTCGGCCGGCACGCTGGA
CATTCTGCAGGACATCGATTTCACCCTCGGTGCGCGGGAAACCGCCGCCATCGTCGGCGCCTCGGGCTCCGGCAAGAGCA
CCTTGCTGTCGATCATCGCGGGGCTCGATACGCCCACGCGCGGCACGGTCAAGCTCGCGGGCGACGACATCTTCGCCATC
GACGAGGACGAACGCGCCGCCCTCCGCGCACAACGCGTGGGCTTCGTGTTCCAGAGCTTCCAGTTGCTGGGCAACCTGAG
CGCGCTCGAAAACGTGATGCTGCCGCTGGAGCTGGCCAACCGCAAGGACGCGCGCAAGGCCGCCACCGAGATGCTCGGTC
GCGTCGGGCTCGGCCAGCGCCTGGGCCACTACCCCAAGGTGCTCTCGGGCGGCGAGCAGCAGCGCGTGGCGTTGGCGCGG
GCCTTCGTGGTCCAGCCGGCGCTGCTCCTGGCCGACGAGCCCACCGGCAGCCTGGACTTCGCGACCGGCGAGCAGGTGAT
GAAGCTGATGTTCGACCTCAACCGCGAACTGGGAACGACGCTGGTGCTGGTCACCCACGACCGCGGCATCGCGTCCCGCT
GCGAGCGCCGCATCACCATCGAGGCCGGGCGTGTGTCGCTCAACGAGAAGACGCCGGTCTCGACGGTCGAACAGGCCGCC
TGA

Protein sequence : 
MSQSPSDAIVAVEHVFKSVTDSAGTLDILQDIDFTLGARETAAIVGASGSGKSTLLSIIAGLDTPTRGTVKLAGDDIFAI
DEDERAALRAQRVGFVFQSFQLLGNLSALENVMLPLELANRKDARKAATEMLGRVGLGQRLGHYPKVLSGGEQQRVALAR
AFVVQPALLLADEPTGSLDFATGEQVMKLMFDLNRELGTTLVLVTHDRGIASRCERRITIEAGRVSLNEKTPVSTVEQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-32 41
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_3683 YP_004155978.1 ABC transporter NC_012469.1.7686878. Protein 1e-40 46
Varpa_3683 YP_004155978.1 ABC transporter NC_008702.1.4606598. Protein 2e-33 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_3683 YP_004155978.1 ABC transporter VFG2059 Protein 1e-14 44