Gene Information

Name : Varpa_3636 (Varpa_3636)
Accession : YP_004155931.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Resistance
Product : rifampin ADP-ribosyl transferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3931098 - 3931493 bp
Length : 396 bp
Strand : -
Note : KEGG: bcj:BCAM2385 rifampin ADP-ribosyl transferase

DNA sequence : 
ATGACTGTCCTGGACACGGGTCCTTACTTCCACGGCACGCGAGCGGAACTTCAGGTGGGCGACCTGCTCACCGCAGGCTT
CCGCTCCAACTACGACGGCCGAGTCGTGATGAACCACATCTACTTCACCGCCTGGCCAAAGGGCGCTGGGCTGGCCGCCG
AAATGGCGAAGGGCGACGGCCGTGGCCGCGTCTACATCGTCGAACCCACAGGTGCCTTCGAGGACGACCCCAACGTCACC
GACAAGAAGTTTCCGGGCAATCCCACACGCTCGTACCGCAGTCGGGAGCCGCTTCGGATCGTCGGCGAACTGGAGACCTG
GGAGCCCTTCGACGCGGAGTACATCCGGCAACTCAAAGAGCGCGTGCGCACAGGCATGGGAGAGATCATCAATTGA

Protein sequence : 
MTVLDTGPYFHGTRAELQVGDLLTAGFRSNYDGRVVMNHIYFTAWPKGAGLAAEMAKGDGRGRVYIVEPTGAFEDDPNVT
DKKFPGNPTRSYRSREPLRIVGELETWEPFDAEYIRQLKERVRTGMGEIIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arr-2 CAJ77045.1 Rifampin ADP-ribosylating transferase Not tested AbaR1 Protein 4e-28 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_3636 YP_004155931.1 rifampin ADP-ribosyl transferase AL939114.1.orf1.gene Protein 1e-29 66
Varpa_3636 YP_004155931.1 rifampin ADP-ribosyl transferase AF001493.1.orf0.gene Protein 2e-28 57
Varpa_3636 YP_004155931.1 rifampin ADP-ribosyl transferase NC_010410.6003052.p0 Protein 2e-28 55
Varpa_3636 YP_004155931.1 rifampin ADP-ribosyl transferase FM897214.1.orf2.gene Protein 4e-27 50