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Name : Varpa_3277 (Varpa_3277) Accession : YP_004155573.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, clpv1 family Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3529484 - 3532189 bp Length : 2706 bp Strand : - Note : TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: reh:H16_A0651 ATP-dependent protease Clp, ATPase subunit; SMART: AAA ATPase DNA sequence : ATGGCGATCTCCCGACGGGCGTTGTTCGGCAAGCTCAATCTCACCCTGTTTCGCGGCATTGAAGCCGCAACAGCATTTGC CAAGCTGAGAGGAAATCCATATGTCGAATTGACGCACTGGATTCATCAAATCTGGCAAATCAATGACAGCGATTTGCATC GCATCTGCCGCCATTACCAAATTGATTTTCAGGTTGTCGAAAAAGATCTGATTTCCAGATTGTCGGAATTGCCCTCGGGC GCGACATCGCTGAGCGATTTTTCCCATCACGTCGAAACGGCCATCGAGCGCGCCTGGATTCTCTCCAGCCTCGAATTCGG CGATCGTCGTGTGCGCAGTGCGTGGCTGCTTGCGGCGTTGGTGCAAACGCCAGATCTGCGGCGGCTGCTCCTTGGCGTAT CGCCCGCCTTCCGAAAGCTCCCGGTCGAGCAGTTGATGGATGACGTCATTTCCCTCATCGCAGGCTCCCCGGAAGACAAC GAAGGGTCGCACGATGGCTTGGGCCTCCCGGCCGCAATGCCAGGAGAAGCGAGCGGCGCGATCGCCGATTCGCCGGACGG CAAATCCGCCCTGGCGCGGTATTGCCGAGACCTGACCGACAGCGCGCGCGGCGGCGAAATCGATCCGGTGATCGGCCGCG AACACGAGATCCGCACGATGGTCGACATCCTGCTGCGCCGGCGGCAGAACAACCCTCTGCTCACCGGAGAGGCCGGGGTG GGCAAGACAGCCGTGGTCGAAGGACTCGCGCTGGCAATCGCCAACGGCGAGGTTCCGCCCTCGCTGCGCGATGCTCGCCT GCTCAGTCTCGATGTAGGTGCGTTGCTCGCTGGTGCCAGCATGCGGGGGGAGTTCGAGTCCCGTCTGAAGTCTCTGCTCG AAGAAGCGAGCAAGTCGAGTCAGCCGGTCGTTCTTTTCATCGACGAGGTGCACACCCTGATCGGTGCCGGCGGACAGGCT GGTACCGGAGATGCAGCCAATCTGCTCAAGCCTGCTCTCGCACGCGGCACCTTGCGCACCATCGGCGCGACCACGTGGAG CGAATACAAGCGCCATATCGAGAAGGACCCTGCGTTGACCCGTCGTTTTCAGACGCTGCAGGTCGCCGAGCCGGAGGAGG CCTCGGCCGTCGAAATGGTGCGCGGGCTGGTCGCCGTCTTTGCCGAACATCACGGTGTCACGGTGCTGGACGAGGCGGTG CGGGCGGCGGTGTCCCTGTCCCATCGCTACATTCCGTCGCGCCAGTTGCCGGACAAGGCCATCAGCCTGCTCGACACGGC CTGTGCACGTGTCGCCATGTCGCTGCACACGCCACCCGCCGTGGTCGATCAACTGCGCCAGCGAATCGCAGCCCTGGACG TGGAACTCGCCTTGCTGGCTCAGGAAAGCGCGATCTCGCGGGGAAGTGATGCCCGATCAAAGCGCTTCGAAGCGGCAAAC GCCCGACTCGATGCCACCGAACACGAACTGTCGACCTACGAGGCCCGGTGGCAAGAAGAGCTTGCGATGGTTCAGCAGAT TCAATCGCTGAGAACAAAGAAGAGGGAGGAGAAGGGGGGGAGGGAGAGTGGCGCCGAGGGCGAGTGGCCCTCGGCGCGAC TGCATGCTCTGGAAGAAGAGCTCCTGTTGCGCCAACAGGACTCGCCATTGGTTCTTTCTCAGGTCGACGAGTCGGTGATC GCGGCCATCGTTGCGGATTGGACTGGGATACCCGTGGGCCGAATGGTGCAAGACGAAGTTGCCGCGGTCTTCAGGCTCGA AGCCACTCTCGGCGAACGCGTCGTCGGCCAGGACCGCGCGCTTGCCGCGATTGCGGAGCGCATCCGTGTGTCGCGGGCGC GGCTGACCGATCCGAACAAGCCGGTCGGCGTCTTCCTGCTGGCCGGTCCATCAGGCGTCGGAAAGACCGAAACCGCGTTG GCACTTGCGGACGCCATGTATGGCGGCGAGCAGAACCTCATCACCATCAACATGAGCGAGTTCCTGGAGCCGCACACCGT CTCGACACTGAAGGGCTCGCCGCCGGGCTACGTGGGCTACGGAGAAGGCGGTGTTCTGACGGAGGCCGTGCGCCGGAAGC CCTACAGCGTGATCCTGCTCGACGAGGTGGAAAAGGCGCATCCGGACGTCCACGAAATCTTCTACCAGGTGTTCGACAAA GGCTGGATGGAAGACGGTGAAGGCCGCCGCATCGACTTCAGAAACACCACCATCCTGTTGACGAGCAACGCAGGTGCGGA ACTCATCGAGAGCCTGTGCGAAGACCCCGCATCGTCGCCCGAAGTCGAAACCCTGCGCGAAGCGCTCCAGCCTGTTCTTC GCCAGGTTTTCCCGGCCGCATTCCTGGGGCGCCTGTCCGTCGTGCCTTATCTGCCATTGGGTGCGCAGGCCCTGGGTCGC ATCGTCTCGCTGCATCTGGACCATGTGGTGCATCGGATGAAAAAGCAGCATGGCATCGAATTGCAATACGGCCCCGGCTT GGTGGCCGAAATCGTCGATCGATGCGGCACGCATGAAACCGGGGCACGCCGACTGACGGGCTTCATCGAGCAGAACCTGC TCCCGGTCTTGTCGCGGCAGTGGCTCAACGCCTTGCAGGAAAAGCGAACGATCGTCCGGATATCTGTCGACGCAAGGCCA CTCGGGAAAACAGGGCCGCGTTCGCAGGAAGGAGATGTCGTCACCTGCCATACCGAGTACGTCTGA Protein sequence : MAISRRALFGKLNLTLFRGIEAATAFAKLRGNPYVELTHWIHQIWQINDSDLHRICRHYQIDFQVVEKDLISRLSELPSG ATSLSDFSHHVETAIERAWILSSLEFGDRRVRSAWLLAALVQTPDLRRLLLGVSPAFRKLPVEQLMDDVISLIAGSPEDN EGSHDGLGLPAAMPGEASGAIADSPDGKSALARYCRDLTDSARGGEIDPVIGREHEIRTMVDILLRRRQNNPLLTGEAGV GKTAVVEGLALAIANGEVPPSLRDARLLSLDVGALLAGASMRGEFESRLKSLLEEASKSSQPVVLFIDEVHTLIGAGGQA GTGDAANLLKPALARGTLRTIGATTWSEYKRHIEKDPALTRRFQTLQVAEPEEASAVEMVRGLVAVFAEHHGVTVLDEAV RAAVSLSHRYIPSRQLPDKAISLLDTACARVAMSLHTPPAVVDQLRQRIAALDVELALLAQESAISRGSDARSKRFEAAN ARLDATEHELSTYEARWQEELAMVQQIQSLRTKKREEKGGRESGAEGEWPSARLHALEEELLLRQQDSPLVLSQVDESVI AAIVADWTGIPVGRMVQDEVAAVFRLEATLGERVVGQDRALAAIAERIRVSRARLTDPNKPVGVFLLAGPSGVGKTETAL ALADAMYGGEQNLITINMSEFLEPHTVSTLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHPDVHEIFYQVFDK GWMEDGEGRRIDFRNTTILLTSNAGAELIESLCEDPASSPEVETLREALQPVLRQVFPAAFLGRLSVVPYLPLGAQALGR IVSLHLDHVVHRMKKQHGIELQYGPGLVAEIVDRCGTHETGARRLTGFIEQNLLPVLSRQWLNALQEKRTIVRISVDARP LGKTGPRSQEGDVVTCHTEYV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 63 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-125 | 48 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 9e-126 | 48 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-96 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_3277 | YP_004155573.1 | type VI secretion ATPase, clpv1 family | VFG2076 | Protein | 0.0 | 56 |
| Varpa_3277 | YP_004155573.1 | type VI secretion ATPase, clpv1 family | VFG2084 | Protein | 1e-131 | 45 |
