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Name : Varpa_3274 (Varpa_3274) Accession : YP_004155570.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion system effector, hcp1 family Function : - COG functional category : S : Function unknown COG ID : COG3157 EC number : - Position : 3526735 - 3527220 bp Length : 486 bp Strand : - Note : KEGG: reh:H16_A0654 hemolysin-coregulated protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796 DNA sequence : ATGACGCAAGACATTTTTCTGAAAATCAACGGGATCGAAGGCGAGTCCCAGGATTCCGACCACAAGAACGAGATCGAGGT GCTGGCCTTCAACTGGAAAGCCTTCCAGGAATCCACCATGCATGCGGGCTCGGGCGGCGGCGCCGGCAAAGCCACCGTCG AGGATCTGGAGTTCGAGCACTACGTCGATCGATCGAGTCCCAACCTGATGAAGTATTGCCTCACAGGCAAGCACGTCCAG GAGGCGAAGCTCACCGTCCGCAAGGCCGGCGGCAATCCGCTCGAGTACCTCAAGCTCACGTTCTCCGACGTGATCATCAC GGCCGTCCAGCCTTTCGGTTCGAACTCCGATGAGTTGCGCATCAGGGAACGCGTGCGCCTGTCCTTCTCGAAGATCAAGC AGGAGTATTCGGTGCAGAACGCCCAAGGCGGCAGCGGTGGCGCGGTGACGGCCGGCTACGACATCAAGGGCAACAAGGAG TCCTGA Protein sequence : MTQDIFLKINGIEGESQDSDHKNEIEVLAFNWKAFQESTMHAGSGGGAGKATVEDLEFEHYVDRSSPNLMKYCLTGKHVQ EAKLTVRKAGGNPLEYLKLTFSDVIITAVQPFGSNSDELRIRERVRLSFSKIKQEYSVQNAQGGSGGAVTAGYDIKGNKE S |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0302 | NP_454882.1 | conserved hypothetical protein | Not tested | SPI-6 | Protein | 2e-49 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_3274 | YP_004155570.1 | type VI secretion system effector, hcp1 family | VFG2071 | Protein | 1e-25 | 46 |
