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Name : Varpa_3114 (Varpa_3114) Accession : YP_004155412.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : RNAase H Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 3346903 - 3349278 bp Length : 2376 bp Strand : - Note : KEGG: vap:Vapar_2875 RNA binding S1 domain protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold DNA sequence : ATGCAGAAAATCATTCGCCAGCTCGCCACTGAAATCAAGGTCGGCGAGCACCAGGTGAAGGCCGCCGTCGAACTGCTCGA CGAAGGCGCCACGGTTCCTTTCATCGCCCGTTACCGCAAGGAAGTGACCGGCGGCCTCGACGACATCCAGCTGCGCGAAC TCGAAGCCCGTCTTTCCTACCTGCGCGAACTCGAAGACCGCCGCGTGGCGGTGCTCAAAGCCATCGACGAACAGGGCAAG CTCACCCCCCAGCTGCGCGCCGCGATCGAATTCGCGCCCACCAAGCAGGAACTCGAAGACCTGTACCTGCCGTTCAAGCA GAAGCGCCGCACCAAGGGCCAGATCGCCCGCGAATTCGGCATCGAGCCGCTCGCCGACAAGCTGCTGGCCGACCCCACGC TGGACCCGGCCGTCGAAGCCAAGGCCTTTCTGCAGCCCGCCACCACGCTGGACGACGGCAAGCCGGGCCCCGATTTCTCC ACCGTGCCGCTCGTGCTCGATGGCGTGCGCGACATCCTTTCCGAGCGCTGGGCCGAAGACGCCGTTCTTGTGCAGCGCCT GCGCGAATGGCTCTGGGCCGAGGGCCTGCTCAAGTCCAGCCTCATGGCCGGCAAGGACGAAAACAACGCCGACATCGCCA AGTTCCGCGACTACTTCGAGTACGACGAGCCCATCGGCCGCGTGCCGTCGCACCGCGCATTGGCCGTGTTCCGCGGCCGC GCGCTCGACATCCTCGATGCCAAGCTGGTGCTGCCCGTGGAGCCCGAGCCGGGCAAGCCCAGCATCGCCGAGGGCAAGAT TGCGCTGCACCTGGGCTGGAGCCACGCGGGCCGCCCGGCCGACGACCTGCTGCGCAAGTGCGTGGCCTGGACCTGGCGCG TGAAGCTGGCGCTGTCCACCGAGCGCGACCTGTTCACCCGCCTGCGCGAAGAGGCCGAAAAGGTCGCCATCAAGGTCTTC GCCGACAACCTGCGCGACCTGCTGCTGGCCGCACCCGCCGGCCCGCGCGTCGTGATGGGCCTGGACCCCGGCATCCGCAC CGGCGTGAAGGTCGCCGTGGTCGATGCCACCGGCAAGCTGGTCGAGACCGCCACCGTGTTCCCGCACGAGCCGCGCAAGG ACTGGGAAGGGTCGCTCCACACCCTCGGCAAGCTCTGCGCCAAGCACGGCGTGAACCTCATCGCCATCGGCAACGGCACC GCCAGCCGCGAGACCGACAAGCTGGCCGCCGACCTCATCAAGCTGCTGGCCAAGATGGCCGCACAGGCCAGCGCGCCCGA GATGACGGTCGAGAAGGTCGTGGTCAGCGAGGCGGGCGCCTCCGTGTATTCCGCCAGCGAATTCGCCTCGCAGGAGATGC CCGACGTGGACGTGAGCCTGCGCGGCGCCGCTTCCATCGCGCGCCGCCTGCAGGACCCGCTGGCCGAGCTCGTGAAGATC GACCCCAAGAGCATCGGCGTGGGCCAGTACCAGCACGACGTGAACCAGAGCGAACTCGCCCGCACCCTGCAGGCCGTGGT CGAAGACTGCGTGAACTCGGTGGGCGTGGACCTCAACACCGCGAGCGTGCCGCTGCTCAGCCGTGTGTCCGGCCTCTCGG GCAGCGTGGCCAAGGCCGTGGTGCGCTGGCGCGAATCGAACGGCGCGTTTTCCACCCGGAAGCAATTGCTCGACGTGACC GGCTTCGGCCCCAAGGCCTTCGAGCAGAGCGCCGGGTTCCTGCGCATCCGCGGCGGTGCCGACCCGCTGGACATCACCGG CGTGCACCCCGAAACCTATCCGCTGGTCGAGCAGATCATCGTGAAGACCGGCAAGCCCATCGCCGAACTGATGGGCCGCG CCGAGATGCTCAAGACCCTGAAGCCCGAGCTCTTCGCCAACGAGAAGTTCGGCGTCATCACGGTCAAGGACATCCTGGGC GAACTCGAGAAGCCCGGCCGCGACCCGCGTCCCGACTTCAAGGTGGCGCGCTTCAACGACGGCGTGGACGACATCAAGGA CCTGGTCGAAGGAATGATCCTCGAAGGCACCGTGAGCAACGTCGCCCAGTTCGGCGCCTTTGTCGACCTCGGCGTGCACC AGGACGGCCTGGTGCACGTGAGCCAGCTGAGCCACAAGTTCGTGAACGATGCGCGCGAGGTCGTGAAGACCGGCGACATC GTCAAGGTCAAGGTGATGGAAGTGGACGTGGCGCGCAAGCGCATCGGCCTGTCGATGAAGCTGGACGCAGCGCCCGCGCG CCGCGACGGGCCGCGCGACAACCGCTTCGAAGGGGCGGGGCGAGGCAATCAGCAGCAGCCGCGCCGCGACAACTCGCCGC AGCCCGCGGGGCAGATGGCCAGTGCGTTTGCGAAGCTGCAGGGGTTGCGCAAGTAA Protein sequence : MQKIIRQLATEIKVGEHQVKAAVELLDEGATVPFIARYRKEVTGGLDDIQLRELEARLSYLRELEDRRVAVLKAIDEQGK LTPQLRAAIEFAPTKQELEDLYLPFKQKRRTKGQIAREFGIEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFS TVPLVLDGVRDILSERWAEDAVLVQRLREWLWAEGLLKSSLMAGKDENNADIAKFRDYFEYDEPIGRVPSHRALAVFRGR ALDILDAKLVLPVEPEPGKPSIAEGKIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTERDLFTRLREEAEKVAIKVF ADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDATGKLVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGT ASRETDKLAADLIKLLAKMAAQASAPEMTVEKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSGSVAKAVVRWRESNGAFSTRKQLLDVT GFGPKAFEQSAGFLRIRGGADPLDITGVHPETYPLVEQIIVKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILG ELEKPGRDPRPDFKVARFNDGVDDIKDLVEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI VKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGNQQQPRRDNSPQPAGQMASAFAKLQGLRK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 55 |
