|
Name : Varpa_2906 (Varpa_2906) Accession : YP_004155208.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, clpv1 family Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3126436 - 3129174 bp Length : 2739 bp Strand : + Note : TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: vap:Vapar_0200 type VI secretion ATPase, ClpV1 family; SMART: AAA ATPase DNA sequence : ATGACCGACATCCGCCGCGTCTCTCTCTTTTCCAAGCTGAACCCGATGCTCTACAAGGCATTGGAGACCGCCACCGCCTT CGCCAAGCTGCGCGGCAACGCCTACGTCGAACTCGTGCACTGGCTGCACCAGATCCTGCAGCTGCAGGACAGCGACATGC TGCGCATCGTCAAGCGGGCGGGGCTCAACCTCGATGCGGTGGAGCAGGACCTCGTGCGCGCGCTCGACCGCCTGCCGCAT GGCGCGACGTCGATCAGCGACATCTCCGAGCACGTGGACAACGCCGTCGAACGCGCGTGGGTGTATGCGAGCCTGCGCTT CGAGGCCACGTCGATTCGCGGCGGGTATCTTCTGGCCGGCATCACCAAGACGCCGGGGTTGCGCCAGGTCCTCTCGGGCA TCTCGCGCGAGTTCGACAAGATCGTGCCCGACGTTTTGGTGGCCCAACTCGAGGCGTGGACCGAAGGCTCGCCAGAAGAC GACTACGACATCACGCCGAACGAGGGCGCGGGCGGCGGTGCGCCGGCCATGCAACACCAGGGCGATGGAACGCCGGCAGG CGGCTCTGCGCTCGCGAAGTACGCGAGCGACCTCACGGCCAAGGCGCGTGCGGGCGAACTCGATCCGGTCTACGGCCGCG ACGAGGAGATCCGCCAGATCATCGACATCCTCATGCGCCGCCGGCAGAACAACCCGCTGCTCACCGGCGAGGCCGGCGTG GGGAAGACGGCGGTGGTTGAAGGCCTGGCCTCGCGGCTGGCTTCGGGCGATGTGCCGCCTTCGCTCAAGGACGTGTCGCT CTGGGTGCTCGACCCCACGCTGCTGCAGGCCGGCGCGGGCGTGAAGGGCGAGTTCGAGCAGCGGCTGCGCCAGGTGATCG ACGAGGTCGAGAAAAGCCCCAAGCCCATCGTGCTCTTCGTCGACGAGGTGCACACGCTGGTCGGCGCGGGCGGCACGGCC GGCACCGGCGATGCGGCCAACCTGCTCAAGCCCGCGCTCGCGCGCGGCCGGCTTCGCACCATCGGCGCAACGACGTGGTC GGAGTACAAGAAGTACATCGAGAAAGACCCGGCGCTCACGCGGCGTTTCCAGACCATCCAGGTGCATGAGCCCACCGAGC CCAAGGCGGTGATCATGCTGCGCGGCATTTCGGCGGAACTGGAGAAGCACCACGGCGTGCTGATCCTCGATGCGGCGCTT GAAGCGGCCGTGAGCCTGTCGCACCGCTACATTCCCGCGCGGCAGTTGCCCGACAAGGCCGTGAGCCTGCTCGACACGGC GTGCGCGCGTGTGGCACTGAGCCAGCATGCGCTTCCGGCGGCGCTCGAAGACCTGCAACGGCGCATCGAGGTGCTCGGCA TCGAGTCCGGCATCGCGGGGCGCGAAGCCGCGATCGGCGTCGGAGAGCACCAGCGTGTCGAGGACATCGCGGCCCAGGTG GCCGCCGCGCAAGCCGAACTCGATCTGCTGGAGCAGCGGCGGCTGGAAGAGAGCGCGCTGGTCGAGCGCATCGTGGCGCT GCGCAAGCTGTTGTCGCCCGCGGCGGTGCCGGTGCAGGCCGAAGCCGACGTCGAAGTTGAAACCGAAGAGGACGCCGACC CGGTCGGCGAAGCACCGCAAGTCGATGCGGAGCCCGAACGCACCCCTGAAGACATTCGCGCCGAACTCAACGAAGCGCAG GACAAGCTGGTGCAGCTGCAGGGCGAATCGCCGCTGATCCTCGCCGCCGTCGATGCGCAGGCCATCGCCACCGTCGTGGC CGACTGGACCGGCATTCCCATCGGCCGCATGGTGCGCGACGATGCGCAGTCCGTGCTGCGCCTGGGCGAGATCCTCTCGG CCCGCGTGGTGGCCCAGCCCGATGCGCTGGAGACCATCTCGCGGCGCATCCGCACAGCGCGCGCGCGGCTGGACAACCCC AACAAGCCCGTCGGCGTTTTCCTGCTGTGCGGCCCCTCGGGCGTCGGCAAGACGGAGACCGCGCTCGCGCTTTCGGAAGC GTTGTATGGCGGCGAGCAGAACCTCGTGACCATCAACATGAGCGAGTTCCAGGAGTCGCACACGGTCTCCACGCTCAAAG GCGCGCCGCCCGGCTACGTGGGCTATGGCGAAGGCGGCGTGCTCACCGAAGCCGTGCGCCGCCGGCCCTACAGCGTGGTG CTGCTCGACGAGATCGAGAAGGCGCACACCGATGTGCACGAGATCTTTTTCCAGGTGTTCGACAAGGGCTGGATGGAAGA CGGAGAAGGACGCCACATCGACTTTCGCAACACCGTGATCATCATGACCTCCAACGTCGGCACCGACCTGGTCATGCAGT TGTGCGAAGACCCGACCCTGCGCCCCGACCCCGAACCGCTTGCAGCGGCGCTGCGCGAACCGCTGCTCAAGGTGTTTGCG CCGGCGCTGCTCGGGCGGCTGGTTGTAGTGCCTTATTACCCGTTGCAGGCCGATGCGTTGCATCGCATCATCCGCCTTCA GCTCGACCGCATCGCGGCGCGGCTCGACGCCAACCACGGCATCGCCATGCACTACGACGACAGCGCCGTGGAACTGGTGG CGCGCCGCTGCACGGCCATCGAGTCGGGCGGCCGGATGATCGACGCCATCCTCACGCACACCATCCTCCCCCGGCTGAGC GAAGAGGTCATCGGCGCCACCGTCGGCGCGCGCAAGCTCGCGGGCGTGCGGCTGTCGGCACAGGAAGACGACTTCCGATA CGAATTCTCGGAAGCATAA Protein sequence : MTDIRRVSLFSKLNPMLYKALETATAFAKLRGNAYVELVHWLHQILQLQDSDMLRIVKRAGLNLDAVEQDLVRALDRLPH GATSISDISEHVDNAVERAWVYASLRFEATSIRGGYLLAGITKTPGLRQVLSGISREFDKIVPDVLVAQLEAWTEGSPED DYDITPNEGAGGGAPAMQHQGDGTPAGGSALAKYASDLTAKARAGELDPVYGRDEEIRQIIDILMRRRQNNPLLTGEAGV GKTAVVEGLASRLASGDVPPSLKDVSLWVLDPTLLQAGAGVKGEFEQRLRQVIDEVEKSPKPIVLFVDEVHTLVGAGGTA GTGDAANLLKPALARGRLRTIGATTWSEYKKYIEKDPALTRRFQTIQVHEPTEPKAVIMLRGISAELEKHHGVLILDAAL EAAVSLSHRYIPARQLPDKAVSLLDTACARVALSQHALPAALEDLQRRIEVLGIESGIAGREAAIGVGEHQRVEDIAAQV AAAQAELDLLEQRRLEESALVERIVALRKLLSPAAVPVQAEADVEVETEEDADPVGEAPQVDAEPERTPEDIRAELNEAQ DKLVQLQGESPLILAAVDAQAIATVVADWTGIPIGRMVRDDAQSVLRLGEILSARVVAQPDALETISRRIRTARARLDNP NKPVGVFLLCGPSGVGKTETALALSEALYGGEQNLVTINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVV LLDEIEKAHTDVHEIFFQVFDKGWMEDGEGRHIDFRNTVIIMTSNVGTDLVMQLCEDPTLRPDPEPLAAALREPLLKVFA PALLGRLVVVPYYPLQADALHRIIRLQLDRIAARLDANHGIAMHYDDSAVELVARRCTAIESGGRMIDAILTHTILPRLS EEVIGATVGARKLAGVRLSAQEDDFRYEFSEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-121 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-121 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2906 | YP_004155208.1 | type VI secretion ATPase, clpv1 family | VFG2076 | Protein | 0.0 | 59 |
| Varpa_2906 | YP_004155208.1 | type VI secretion ATPase, clpv1 family | VFG2084 | Protein | 3e-127 | 41 |
