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Name : Varpa_2904 (Varpa_2904) Accession : YP_004155206.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 3123366 - 3125246 bp Length : 1881 bp Strand : + Note : KEGG: vap:Vapar_0198 type VI secretion protein, VC_A0110 family; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879 DNA sequence : ATGGACGCAAGGCTGCTCGACTACTACAACCGCGAACTCACCTACATGCACGAGCTCGGGGCCGAGTTCGCGCAGCGCTA CCCGAAGATCGCGGGCCGCCTGGGCATGCGCGGCATCGAGGTCAGCGATCCGTACGTGGAGCGCCTGCTCGAGGGCTTCA GCTTTCTCACGGCGCGTATCCAGCTCAAGATGGATGCGGAGTTTCCGCGCTTCTCGCAGCGCCTCCTGGAGGTGGTGTAT CCCAACTTCCTCGCGCCGCTGCCCGCGATGGCGGTGGTGCAGATCGACGGCAACCTCAACGAAGGCTCGCTGAAGGCGGG CTACGAACTGCCGCGCCACACCGTCCTGCGCGGCCGCATGATCAAGGGCGAGCAGACGGCTTGCGAGTTCCGCACCGGCC ACCCGGTCACGCTGTGGCCCATCAGGATCACCGAGGCCGGCATCGGCCCCGTGCCCGCGGAGATCGGGCATGCGATGCCG ATGGTGGCGCGCCAGGCCAAGAGCGCGATCACCATCAAGCTCGAAGCGGTGGGCGGCGCCAGGTTCTCCGAGATGCCGCT CGACCGGCTCGAATTCTTTCTCTCGGGCGCCGAGTTGCATGCGCTGCGCGTGCTCGAACTGGTGGCGCACCGCAGCGTGG GGGCCGTGTGCCGCAGCGGCCCGGGCGCCCAAGGCGGGTCGTCGCGCATCGTGCCGCTGGGCGACGAGGCCATCCGCCAC GAAGGCTTCGACCCCGACCAGGCGCTGCTGCCCTACGACGCGCGCTCGTTCCAGGGCTACCGGCTGCTGCACGAGTACTT CGCGTTTCCCGATCGCTACCTGTTCTTCAGCGTGAAGAACCTGCGCGCCGCGGTCTCGGCCATCGGCGGCAGCACGATGG AGATCGTGATCCTGCTGGACCGCGCCGACGCCGACCTGGAGCGGCTGGTGGACGCCAAGCACTTCTCGCTCTTCTGTACG CCCATCATCAACCTCGTGCCGCGCCGCAGCGACCGCATCCCGGTCGGGCCGGGCCAGCACGAGCACCACGCGGTGATCGA CCGCACGCGCCCGCGCGACTTCGAGATCTTCACCGTCGAGCGCGTCACCGGCCACATGACCAACGGCTCGGAGGAGCGCG AGTTCCGCCCCTTCCTCGGCTCGTTCGCGACCGACGACGGCGACTTCGGCGCGTATTTCTCGCTGCGCCGCGAACCGCGC CTGGTGTCGGACCGCGCACGCGCGCAGGGCACACGCACCAGCTACACCGGCAGCGAGGTCTACGTGTCGCTGGTCGACCA GCACGACGCGCCGTTTCCGCACAGCCTGCGGCACATCACGCTCGATGCGCTGTGTACCAACCGCGACCTGCCGCTGCTGC TTCCGACGGGGCTCGAGTCGGACTTCACGCTGCGCATCTCGGCGCCCGTGCGCTCGATCCGCATCCTGCGCGGCCCGTCG CGGCCGTACCCGGCGCTGGCCGAAGGCGCGCTCACCTGGCGGCTCATCAGCCACCTGGGCCTGAACTACCTGAGCCTGAC CGACGTCGATGCCGCGCAGGGCGCCGCCGCGCTGCGCGAGATGCTCGACCTCTACGGCAACCTCGCCGATCCCGCGGTGC GCCGCCAGATCCAGGGCGTGCGCTCGATGGCGCTCGCGCCGGTATTCCGCCGCTTGCCCGAGCCGGGGCCCATCGTCTTC GGGCGCGGCGTGGAGGTGGCGCTCAAGATCGACGAGGTCGCGTTTTCCGGCGCGAGCCCGTATCTTTTCGGCGCGGTGCT GGAGCAGTTCTTCAGCCGCCACGTGTCGCTCAATGCCTTTACCGAGTTCGCGCTCTCCAGCCTGCAGCGCGGCGAAATCG CGCGCTGGACCCCACGGGTCGGACGCCGCCCCGCCGTATGA Protein sequence : MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARIQLKMDAEFPRFSQRLLEVVY PNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTVLRGRMIKGEQTACEFRTGHPVTLWPIRITEAGIGPVPAEIGHAMP MVARQAKSAITIKLEAVGGARFSEMPLDRLEFFLSGAELHALRVLELVAHRSVGAVCRSGPGAQGGSSRIVPLGDEAIRH EGFDPDQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVKNLRAAVSAIGGSTMEIVILLDRADADLERLVDAKHFSLFCT PIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVTGHMTNGSEEREFRPFLGSFATDDGDFGAYFSLRREPR LVSDRARAQGTRTSYTGSEVYVSLVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRISAPVRSIRILRGPS RPYPALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPAVRRQIQGVRSMALAPVFRRLPEPGPIVF GRGVEVALKIDEVAFSGASPYLFGAVLEQFFSRHVSLNAFTEFALSSLQRGEIARWTPRVGRRPAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0289 | NP_454871.1 | hypothetical protein | Not tested | SPI-6 | Protein | 7e-136 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2904 | YP_004155206.1 | type VI secretion protein | VFG2074 | Protein | 3e-144 | 48 |
