Gene Information

Name : Varpa_2899 (Varpa_2899)
Accession : YP_004155201.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 3119135 - 3119707 bp
Length : 573 bp
Strand : +
Note : KEGG: vap:Vapar_0193 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301

DNA sequence : 
ATGGCAGACAACCGTGTCAGAAACAGTGGTCAGAAGTTCATCGCGCGGAACCGGGCGCCGCGTGTGCAGATCGAGTACGA
CGTCGAGATCTACGGCAGCGAACGCAAGATCCAGCTGCCCTTCGTGATGGGCGTGATCGCCGACCTCGCGGGCAAGCAGA
TGGACCCGATGCCCGATCTGGCCGAGCGCGATTTCATGGAAGTCGACATCGACAACTTCGACGACCGCATGAAGGCGATC
AAGCCGCGCGTGGCGTTCCAGGTGCCCAACACGCTCACGGGCGAAGGCCAGATGAATGTCGACATCACCTTCGACACCAT
GGACGACTTCTCGCCCGCGCGCATCGCGGGCCAGGTGGGCGCGTTGCAGCAGTTGCTCGCCGCACGCACCGAACTGTCGA
ACCTGCTCTCGTACATGGACGGCAAGAACGGTGCCGAGCAATTGATCGCGCAGGCCCTGCAGAACCCGGCGCTGCTCAAG
TCGCTCGCTTCCGCGCCCAACCCGGCTGTCGCCAAGGCGGTCGAAGCGGCGAACGAGAAAGCGGGCCACGCGCCCGGCGG
TTCTCCCGAGTAA

Protein sequence : 
MADNRVRNSGQKFIARNRAPRVQIEYDVEIYGSERKIQLPFVMGVIADLAGKQMDPMPDLAERDFMEVDIDNFDDRMKAI
KPRVAFQVPNTLTGEGQMNVDITFDTMDDFSPARIAGQVGALQQLLAARTELSNLLSYMDGKNGAEQLIAQALQNPALLK
SLASAPNPAVAKAVEAANEKAGHAPGGSPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0297 NP_454879.1 conserved hypothetical protein Not tested SPI-6 Protein 3e-55 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_2899 YP_004155201.1 type VI secretion protein VFG2069 Protein 2e-54 67