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Name : Varpa_2722 (Varpa_2722) Accession : YP_004155031.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 2933381 - 2934592 bp Length : 1212 bp Strand : + Note : PFAM: integrase family protein; KEGG: rfr:Rfer_1354 phage integrase DNA sequence : ATGGCATTGACGGATATGGCAGCACGCAAGGCAAAGCCTGAGGTTCGCTCATACAACCTCACGGACGGGGCGGGCCTATA TCTGCAGGTGACGCCTGCAGGCGGCAAACTGTGGCGCTGGAACTACCGCCATGATGGCAAGCAGAAGACGATGGCCTTCG GGAGCTACCCCGAGGTGTCGATCGCTGACGCACGCGAAGCACACCAGGCGGCGCGCAAGCAGAAGGCCGCGGGCGCTGAT CCAATGGCGCAGCGGAAGCTGGACAAGATCGCAGGGGTGATGGCTAGGGAGCACTCATTCAAGGCCATTGCACAACAGTG GCACGACCAGTGGAAGCCGAACAAGGCCGAGCGGCATGCTCGCATTGTGTGGGGCCGCCTTGAGAACGATGTCTTCCCTG CTATCGGTGCGCGACCGATCTCCGAGGTCAAACCTTCGGAGCTCGTGGCCATGATCAAGAAGATAGCCGGCCGCGGCGCA CCTGACATGGCGAAGCGGTGCCTGGAGATCAGTGGGCAGGTCTTTCGTTATGCCGTGGCGCATGGCATTTCCGAGCGAAA CCCGGCTGCGGACATCAAACCTGGCGACGTGTTGCCGCCGCGAAAGACGAACCACTTCGCGCGCGTCGAATCGAGTGAGC TGCCAGACCTACTTCGCAAGATCGAAGCCTACTCAGGGACGCCTGCTACGCGGCTGGCGATGAAGCTGATGGCCTATACC TTTGTGCGCACGGGTGAGCTCATCGGCGCGCGTTGGCCCGAGTTCGACCTCGATGCCGCTGTGTGGCGCATCCCTCCAGA GCGTATGAAGATGAAGACGCTGCACATCGTCCCGCTGTCGACGCAGGCTGTCGAGGTGCTGCGCACGCTCCAACTGGTGA CCGGGGACAGTGCGCTGCTCTTTCCTGGTGAGAGAGATCATGAGAAGTCGATCAGCAACAATACCATCCTGGGCGCGCTG AAGCGGATGGGCTACGCGGGTCGAATGACCGGCCACGGCTTCCGCGGTGTGGCCTCGACCGAATTGCACGAGATGGGGTT CGAGGAGGCGCACATCGAGGCGCAGATGTCGCACCTGAAGCGCAACCGAGTCGCCTCGGCCTACGACCATTCGAAGTACC TCAAGCAGCGCGTCGCGATGATGCAGACTTGGGCCGATCGTCTCGACCAGTTCCGCGCTGGCGCGAAGATCTTGCCGTTC AAGGCTGCGTAG Protein sequence : MALTDMAARKAKPEVRSYNLTDGAGLYLQVTPAGGKLWRWNYRHDGKQKTMAFGSYPEVSIADAREAHQAARKQKAAGAD PMAQRKLDKIAGVMAREHSFKAIAQQWHDQWKPNKAERHARIVWGRLENDVFPAIGARPISEVKPSELVAMIKKIAGRGA PDMAKRCLEISGQVFRYAVAHGISERNPAADIKPGDVLPPRKTNHFARVESSELPDLLRKIEAYSGTPATRLAMKLMAYT FVRTGELIGARWPEFDLDAAVWRIPPERMKMKTLHIVPLSTQAVEVLRTLQLVTGDSALLFPGERDHEKSISNNTILGAL KRMGYAGRMTGHGFRGVASTELHEMGFEEAHIEAQMSHLKRNRVASAYDHSKYLKQRVAMMQTWADRLDQFRAGAKILPF KAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 3e-77 | 44 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 1e-74 | 43 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 3e-74 | 42 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 3e-74 | 42 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 4e-74 | 42 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 4e-74 | 42 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 2e-75 | 42 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 4e-75 | 42 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-64 | 41 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-64 | 41 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 6e-64 | 41 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 1e-63 | 41 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 8e-64 | 41 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 6e-64 | 41 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 4e-63 | 41 |
| int | NP_458759.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 2e-62 | 41 |
| int | NP_807963.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 2e-62 | 41 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 1e-62 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 2e-64 | 41 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 4e-63 | 41 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 4e-63 | 41 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 4e-63 | 41 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 3e-63 | 41 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 5e-63 | 41 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-63 | 41 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 5e-63 | 41 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 3e-64 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 2e-64 | 41 |
| Z4313 | NP_289539.1 | pathogenicity island integrase | Not tested | OI-122 | Protein | 2e-62 | 41 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 3e-77 | 41 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 4e-68 | 41 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 4e-68 | 41 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 3e-73 | 41 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 4e-73 | 41 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 4e-73 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2722 | YP_004155031.1 | integrase family protein | VFG0783 | Protein | 2e-74 | 42 |
| Varpa_2722 | YP_004155031.1 | integrase family protein | VFG0626 | Protein | 7e-65 | 41 |
| Varpa_2722 | YP_004155031.1 | integrase family protein | VFG1693 | Protein | 2e-64 | 41 |
| Varpa_2722 | YP_004155031.1 | integrase family protein | VFG0598 | Protein | 2e-73 | 41 |
