Gene Information

Name : Varpa_2568 (Varpa_2568)
Accession : YP_004154879.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2782144 - 2782803 bp
Length : 660 bp
Strand : +
Note : KEGG: vap:Vapar_2384 two component transcriptional regulator winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGCGACTCCTGCTTCTCGAAGACGACGTGATGATCGGCGAGGCCGTGCTCGACCTGCTGCGCGCCGAGCAATACGCGGT
GGACTGGGTGAAAGACGGCGAGGCCGCAGAGTCGGCCTTGCGCACCCAGCAGTACGACCTGGTGCTGCTCGACCTGGGTG
TGCCGCGCCGTGACGGCCTGGAGGTGCTGCGAAGCCTGCGCGCCCGCAAGCAGCGCATGCCGGTGCTGATCGCCACCGCG
CGCGACTCGGTGCAGCAGCGCATCGAAGGGCTCGATGCCGGCGCCGACGACTACGTGCTCAAGCCCTATGACCTCGACGA
GCTGCTGGCCCGCATCCGCGCCTTGCTGCGCCGCGCTGCGGGGCGTGCCGAGCCGGTGTACGAGCACATGGGCGTGAGCA
TCAACCCCGCCACGCGCGAGGTCACGGTGGCCGGTCAGCCGGTGGTGCTGTCGGCGCGCGAATGGGCGGTGATCGAGCCG
CTCCTGGCGCGTCCGGGCATGGTGCTCTCGCGCGCCCAACTCGAGGAAAAGCTCTACAGCTGGAAGGACGAGATCAGCAG
CAACGCGGTCGAGGTCTACGTGCACGGTCTGCGCAAGAAGCTCGGCGCCGAGTTCATCCGCAACGTGCGAGGCGTCGGCT
ACATGGTGCCGAAGGTATGA

Protein sequence : 
MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRRDGLEVLRSLRARKQRMPVLIATA
RDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAAGRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEP
LLARPGMVLSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAEFIRNVRGVGYMVPKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-26 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_2568 YP_004154879.1 winged helix family two component transcriptional regulator BAC0487 Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_2568 YP_004154879.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-22 42
Varpa_2568 YP_004154879.1 winged helix family two component transcriptional regulator VFG0473 Protein 4e-30 42