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Name : Varpa_2429 (Varpa_2429) Accession : YP_004154740.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 2628644 - 2630524 bp Length : 1881 bp Strand : + Note : KEGG: rpf:Rpic12D_1690 type VI secretion protein, VC_A0110 family; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879 DNA sequence : ATGGACCCGCAACTGCTCGACTACTACAACAAGGAACTGGTCTACATGCGCGAGGCCGCTAGCGAGTTCGCTGCCTCGCA CCCCAAGATCGCGAAGCGCCTGGGCATGCACGGCATCGAGGTGGCCGACCCGTATGTGGAGCGGCTGATCGAGTCGTTCA GTTTTCTCTCGGCGCGCATGCAGATCAAGCTGGACGCGGAGTTCCCGCGCTTCACGCAGCGGCTGCTCGAAGTGCTGTAC CCCAACTACCTGAGTCCCACGCCGTCGATGGCGGTGGCGCAATTGCACCCCAGCGTGAAGGAGGGCGACTTCACGCGCGG CTTCGTGGTGCCGCGCGGCACGGCCTTCCATGCGCGCGTGCCGGCGGGCGAGGAAACGCCGTGCGAGTTCCGCTCCAGCC AGGACGTGACGCTGTGGCCCATCGAGATCGTCGATGCCAAGCTCACCGGCGCGCCGCCCGACATCCCCGCGCTGGAGCGC TACCTGCCGCCGCACGTGCAGGTGACGGGCGCGCTGCGTTTGCGCTTGCGCACGGTGGGCGAGATGGGCTTCGGCGCGCT GGTCGGGCTCGACCGGCTGCCGATCTACCTGCGTGGCAACGAGCATGTGGCTTCGCATCTGTTCGAGCTGCTGCACACCT CGGCGGTCGCCACCTTCGTCGGCGAACCGGGCAAGCTGATGGAGCGGCCGCATGTGGTGACCGACGGGGCGCTGGTGCAC GAAGGACTCGCGCCGGGGCAGGGGCTGCTGCCGCTGGCGTGGAACACCTTTCACGGCCACAACCTGCTGCACGAATACTT CGCGTGCCCCGAGCGCTTCTATTTCTTCACGCTGACCCAGCTGGCGCCGGGGCTTGCGCGGGCGCAGGGCAAGGAGATCG AGATCCTCGTCCTGTTGAGCAAGCCGCCGAGGTCGCTGGGTGCCCTGGTCGACGCCGGGCAGTTCGCGCTCTTCAGCACG CCGGTCGTCAACCTCTTCGAGCGGCGCACCGACCGCGTCGAACTCAATGCGGCGCAGCCTGAGTTCCACCTGGTGCCCGA CCGCTCGCGGCCGCTCGATTTCGAGGTCTATTCGGTCCAGCGCATCGCGGGCCAGCAGGCGCAGACCACGGCCGAGCTGG AGTTCCGCCCGCTCTACCAGACGCTCAATGAAGACGAAGGCAACCACGGCCGCTACTTCTCGGTGCGCCGCGAGCAGCGG CTCGCCTCCGACACATCGCGCAAGTACGGGACGCGCACGCCGTACATCGGCACCGAGGTGTTTCTTTCGCTGGTCGACCA GCACGAGGCGCCGTATCCGGAGAGCTTGCGCTACCTGTCGGTGAAGGCGATGCTCACGAACCGCGACCTGCCGTGCCTGG TGCCGCGCAACGGTCATTCGGATCTCGCGGTGTCCGATTCGATCCCGGTGTCTGCGGTGGGCCTGATCCGCCCGCCGAGC ATTCCGAAGTCGCCCTTCGCGCAGCGCGAAATCGCGTGGCGGCTGATTCGCCAACTCGGCTTCAACCACCTGCCGCTGGC CGACATGCCGCACCGCGAAGGCGCGCAGGCTTTGCGCGACATGCTGCGGCTGTTCGTGTCGGCCGACAGCGACGTGCTTC GCCGGCAGATCGACAGCCTCGTGGGCTCGCGCATCGAGCCGGTGACGCGGCGCCTGCCGGGCTCGGGGCCGTTGATCTAC GGGCGCGGCGTGCAGTGCACCTTGAGCGTGGACGAAGAAGGCTTCTCGGGCACGAGCCCATATCTGCTGGGGCTGGTGCT GGAGCACTACCTCGCGCGGCACGTGAGCATCAACGTGTTCACGCAGACGACGCTCGAATCGATGCAGCGCGGCACGGTGG CCAAGTGGCCCGTGCGCATGGGCGGGCGTGGGATCGTCTGA Protein sequence : MDPQLLDYYNKELVYMREAASEFAASHPKIAKRLGMHGIEVADPYVERLIESFSFLSARMQIKLDAEFPRFTQRLLEVLY PNYLSPTPSMAVAQLHPSVKEGDFTRGFVVPRGTAFHARVPAGEETPCEFRSSQDVTLWPIEIVDAKLTGAPPDIPALER YLPPHVQVTGALRLRLRTVGEMGFGALVGLDRLPIYLRGNEHVASHLFELLHTSAVATFVGEPGKLMERPHVVTDGALVH EGLAPGQGLLPLAWNTFHGHNLLHEYFACPERFYFFTLTQLAPGLARAQGKEIEILVLLSKPPRSLGALVDAGQFALFST PVVNLFERRTDRVELNAAQPEFHLVPDRSRPLDFEVYSVQRIAGQQAQTTAELEFRPLYQTLNEDEGNHGRYFSVRREQR LASDTSRKYGTRTPYIGTEVFLSLVDQHEAPYPESLRYLSVKAMLTNRDLPCLVPRNGHSDLAVSDSIPVSAVGLIRPPS IPKSPFAQREIAWRLIRQLGFNHLPLADMPHREGAQALRDMLRLFVSADSDVLRRQIDSLVGSRIEPVTRRLPGSGPLIY GRGVQCTLSVDEEGFSGTSPYLLGLVLEHYLARHVSINVFTQTTLESMQRGTVAKWPVRMGGRGIV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0289 | NP_454871.1 | hypothetical protein | Not tested | SPI-6 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_2429 | YP_004154740.1 | type VI secretion protein | VFG2074 | Protein | 6e-129 | 44 |
