Gene Information

Name : Varpa_0233 (Varpa_0233)
Accession : YP_004152566.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Unknown
Product : alanine racemase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0787
EC number : 5.1.1.1
Position : 250169 - 251269 bp
Length : 1101 bp
Strand : +
Note : TIGRFAM: alanine racemase; KEGG: vap:Vapar_0229 alanine racemase; PFAM: alanine racemase domain protein

DNA sequence : 
ATGCCGCGCCCCATTCTTGCCACCGTCCACACCGCCGCCCTTCGCAACAACCTGGAGCGGGTCCGCCGTTCGGCGCTCGA
CGCCCGTGTCTGGGCCGTGGTCAAGGCCAATGCCTATGGCCACGGCATCGAGCGGGTCTATGAAGGCCTGCGCGGCGCCG
ACGGCTTCGCGCTGCTCGACCTGGCCGAGGCCGAGCGCGTGCGCGCCCTGGGCTGGCGCGGCCCCGTGCTGCTGCTGGAA
GGCGTGTTCGATGCGCGCGACCTGGAGCTGTGCTCGCGCCTGGACCTCTGGCACACCGTGCATTGCGACGAGCAGATCGA
CATGCTCGCAGCGCACAAGACCCTCAAGCCGCAGCGTGTTTTCCTGAAGATGAACTCGGGCATGAACCGCCTGGGCTTCA
CGCCCGAGCGCTTCGGCTCGGCCTGGACGCGCCTGAACGCGCTCACGCAGGTCGACGAGATCTCGCTGATGACGCACTTC
AGCGACGCCGACGGCGCCCGCGGCATCGCGCACCAGCTCGAAGCCTTCGAGCGCGCCACGCGCGACCTGCCGGGCGAGCG
CTCCATTGCCAACAGCGCCGCCACCCTGCGTCACGCCGACCAGACGCGCGGCGACTGGGTGCGCCCCGGCATCGTGCTGT
ACGGCAGCGCCCCCGACTTTCCGTTGCACGACGCGGCGCACTGGCAACTGCAGCCCACGATGACGCTGTCGACGCAACTG
CTCTCGGTGCAGACGCTCAAGGCCGGCGACACCATCGGCTATGGCTCCAACTTCACGGCCGAGGGGCCGCTCACCATCGG
CGTGGCCGCGGTTGGCTACGCCGATGGCTATCCGCGCCACTGCAACACCGGCACGCCGGTGCTGGTGAACGGCGTGCGCA
CCCGCATGGTGGGCCGCGTGAGCATGGACATGATCACCGTCGACCTCACGCCGGTGCCCGATGCGAAGTTCGGCGCCGAA
GTCACGCTGTGGGGCCGCTCCGCTTCGACGGGCGCGGTGCTCCCCATCGACGAAGTCGCGCAGGCCGCGGGCACCGTCGG
CTACGAACTCATGTGCGCCGTGGCCCAGCGCGTGCCGTTCGCCGCTCCCACCGACGAATGA

Protein sequence : 
MPRPILATVHTAALRNNLERVRRSALDARVWAVVKANAYGHGIERVYEGLRGADGFALLDLAEAERVRALGWRGPVLLLE
GVFDARDLELCSRLDLWHTVHCDEQIDMLAAHKTLKPQRVFLKMNSGMNRLGFTPERFGSAWTRLNALTQVDEISLMTHF
SDADGARGIAHQLEAFERATRDLPGERSIANSAATLRHADQTRGDWVRPGIVLYGSAPDFPLHDAAHWQLQPTMTLSTQL
LSVQTLKAGDTIGYGSNFTAEGPLTIGVAAVGYADGYPRHCNTGTPVLVNGVRTRMVGRVSMDMITVDLTPVPDAKFGAE
VTLWGRSASTGAVLPIDEVAQAAGTVGYELMCAVAQRVPFAAPTDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dadX AAC61705.1 alanine racemase Not tested PAI I CFT073 Protein 3e-79 53