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Name : Varpa_2158 (Varpa_2158) Accession : YP_004154475.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : polypeptide-transport-associated domain-containing protein shlb-type Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG2831 EC number : - Position : 2348977 - 2350722 bp Length : 1746 bp Strand : + Note : PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: vap:Vapar_6356 polypeptide-transport-associated domain protein ShlB-type DNA sequence : ATGCTGGCCGGCGTGCTGTTGGGCGGCCCACTGTGGGCTCACGCCCAGGCTCCCAGCACACCGCAACCCTTCGTCGAGCA ACAGCGCCAGCAGGAGCGCGAACGCGCCTTGCGCGAGCAGAACGAACGTACTGTTGACCAGCGCCCCCAAGCTGCCCCGC CAGCACCCGCACAGCGCATCCCCGAATCCGAGTCCCCGTGCTTTCGCATCGACCGCGTACTGCTGGCAGGCGAGCAGTCC GAAGCCTTCCAATGGGTCGTCGCCGATCTGTCGGGCCCCGATGGCAACGACTCACCCATTGGCCGATGCCTCGGCACCGC CGGTGTCAACGTCGTTCTCGCGCGAGCGCAGCAAGCCGCGATTGCTCGCGGTTACGTCACGACCCGCGTTCTCGCCGCGC CCCAGGATCTCTCCACCGGCACATTGACGCTCTCGCTGGTGCCGGGGCGCATCGCCGCCATTCGCCTGACGCCGGATTCT TCGTCCACGTTGCTCGGCAGTTCCGCCTTGCTGACCACGGCGATCCCTGCACGCGTTGGCGATCTATTGAACCTGCGCGA CATCGAGCAAGGCCTCGAGAACTTGAAGCGCGCACCCACCGCCGAAGCCGACATCCAGATCGAACCATCGACAGCGCCGA ACGCCAGGCCTGGCGACAGCGATCTGGTCGTCAAGTACGTTCAATCCAAGAAATGGCGCGTCAATCTGAGCCTGGACGAC AGTGGCACCAAGGCCACAGGCCGCAATCAAGCCGGCGTTACCGCATCGTTTGACAACCCCTTGGGTCTGAACGACCTGTT CTACGTCAGCGCCAACCACAGCATCAACAGTCACTTCCTTTGGGAACCGAGCTACGGCACCGAAGGCCAGGTCGCGCACT ACTCGCTGCCCTTCGGCTATTGGATGCTCGGCTTCACTGCATCGAACAGCCAGTATCACCAGAGCATCGCCGGTCTGAAC GGCGATATCGTCTACGCCGGCAAGACCAGCAACGCCGAGGTCAAGCTCTCGCGCCTGGTCTACCGCGATCAAAGCCGCAA GACGACGGTGGCGATCAAGGGCTTTCGCCGCGAGTCGCGCAGCTTCATCGAAGACCTGGAACTGGACGTGCAGCACCGCG TGGCCGGTGGCTGGGAGCTGAGCCTGAATCACAAGGAGTACATCGGTGAGGCGACGCTCGAAGGCACGCTGGCCTACAAG CGTGGCACCCGCGCTTTTGGCGCCAAAGAATCGTCGGAAGAGATCGCCTATCGCAATCGCGACGATCTGAATGACCCGCT GGAGGGCACTTCGCGCCTGAAGCTCTACACCGCCGACATCAGCCTCAACGCGCCATTCAAGCTCGGCGAGCAAAAGCTGC GGTACTCGGGCCTCATTCGCGCCCAGTGGAACCGCACGCCGCTGACACCGCAGGATCGCTTCGCCATCGGCGGGCGCTAC ACAGTGCGCGGCTTCGATGGCGAGGCGAACCTGATGGGCGAGCGCGGCTGGCTGCTGCGCAATGACATCGGCTGGGCCAT GGGACAGAGCGGCGCCGAGCTCTATGCGGGTATGGACTACGGCCACGTCGGCGGGCGTTCCACCATCGACACGCTCGGCC AGAACCTGGCGGGGGCCGTGGTCGGTGTGCGCGGCCAGTGGAGCAAGTTGAGCTACGACTTCTTCGTCGGTGCACCCATC AGCAAGCCCGAGGGCTATCGCACCGCGAAGGTCACGCTCGGCTTCAATTTGAACGCGAGCTTTTGA Protein sequence : MLAGVLLGGPLWAHAQAPSTPQPFVEQQRQQERERALREQNERTVDQRPQAAPPAPAQRIPESESPCFRIDRVLLAGEQS EAFQWVVADLSGPDGNDSPIGRCLGTAGVNVVLARAQQAAIARGYVTTRVLAAPQDLSTGTLTLSLVPGRIAAIRLTPDS SSTLLGSSALLTTAIPARVGDLLNLRDIEQGLENLKRAPTAEADIQIEPSTAPNARPGDSDLVVKYVQSKKWRVNLSLDD SGTKATGRNQAGVTASFDNPLGLNDLFYVSANHSINSHFLWEPSYGTEGQVAHYSLPFGYWMLGFTASNSQYHQSIAGLN GDIVYAGKTSNAEVKLSRLVYRDQSRKTTVAIKGFRRESRSFIEDLELDVQHRVAGGWELSLNHKEYIGEATLEGTLAYK RGTRAFGAKESSEEIAYRNRDDLNDPLEGTSRLKLYTADISLNAPFKLGEQKLRYSGLIRAQWNRTPLTPQDRFAIGGRY TVRGFDGEANLMGERGWLLRNDIGWAMGQSGAELYAGMDYGHVGGRSTIDTLGQNLAGAVVGVRGQWSKLSYDFFVGAPI SKPEGYRTAKVTLGFNLNASF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| S1 | AAQ19124.1 | putative hemolysin activator HlyB | Not tested | PAI I CL3 | Protein | 5e-94 | 44 |
| NMB1762 | NP_274762.1 | hemolysin activation protein HecB | Not tested | IHT-C | Protein | 2e-88 | 44 |
