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Name : Varpa_2083 (Varpa_2083) Accession : YP_004154401.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 2269052 - 2270458 bp Length : 1407 bp Strand : + Note : TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: vap:Vapar_1822 replicative DNA helicase; SMART: AAA ATPase DNA sequence : ATGTCCGCCGTTTTCTCCTACTCCGACGGTAATCCGTCGGCCGACCGCCAGATCGCCCAACTGCGCATTCCGCCTCACTC CATCGAGGCCGAATCGAGCGTGCTCGGCGGCCTGCTGCTCGACAACGGCGCCTGGGACCGCATGGGCGACCTGCTGGTCG ACGACGACTTCTACCGCCATGAGCACAAGCTGATCTACGCCGCCATCGGCGGACTGATCAATGCCAGCAAGGCGGCCGAC GTCATCACCGTCTTCGAGCGGTTGCAGAGCCTGGGCAAGGCCGACGATATCGGCGGGCTGGTCTACCTGAACTCGCTCGC GCAGTACGTGCCGAGCGCGAGCAACATCCGGCGCTATGCGGAGATCGTGCGCGAGCGCTCGATCCTGCGAAAGCTCGTCT CGGCCAGCGACGAGATCGCGACCAACGCCTTCAACCCGCAGGGCAAGCCGGTCGACAAGATCCTGGACGAAGCCGAGCAG AAGATCTTCAACATCGGCGAAGAAGGCTCGCGGATGAAGCAGGGCTTCCAGAGCATGGATGCCCTGGTGGTCGAGCTGCT CGACCGCGTGACCGAAATGGCCGAGAACCCGAACGACATCACGGGCGTTCGCACCGGCTTTCACGACTTCGACAAGATGA CGTCGGGCCTGCAGCCCGGCGACATGATCGTGCTGGCCGCGCGTCCCTCGATGGGCAAGACCTCGCTGGCGATCAACATC GCCGAGCACGTGGCGCTCAACGAAGGGCTGCCCGTTGCCGTGTTCTCGATGGAAATGGGCGCGTCCCAGTTGGCGGTGCG TATCGTCGGTTCGATCGGCCGCATCGACCAGGGGCACCTGCGCACCGGCAAGCTCAGCGACGAAGAGTGGCCGCGCCTGA CCGAAGCCATCGAAAAGCTGCGCACCGTGTCGCTGCACATCGACGAGACGCCGGGTCTCTCGACCAGCGAACTGCGCGCC AATGCGCGCCGGCTTGCGCGCCAGTACGGGCGCCTGGGCCTGATCGTGGTCGACTACCTGCAGCTCATGTCGACCAGCTC GAGCGGCGACGAGAACCGCGCCACGGCTGTGGGCGAAATCTCGCGCGGCCTGAAGATGCTCGCCAAGGAGCTCAAGTGCC CGGTGATCGCGCTCTCGCAGCTCAGCCGCGGCGTGGAAAGCCGCACCGACAAGCGCCCGATGATGAGCGACTTGCGCGAG TCCGGCGCCATCGAGCAGGACGCGGACATCATCATGTTCATCTACCGCGACGACTATTACGACAAGAACAGCAAGGAGCC GGGCGTGGCCGAGGTGATCATCAGCAAGCACCGGAACGGCCCGACGGGCACGATCAAGCTGGCCTTCCTGAAGCCGATCA CCAAGTTCGAGAACCTGGAAGGCTACAGCCACAGCGACCAGTACTGA Protein sequence : MSAVFSYSDGNPSADRQIAQLRIPPHSIEAESSVLGGLLLDNGAWDRMGDLLVDDDFYRHEHKLIYAAIGGLINASKAAD VITVFERLQSLGKADDIGGLVYLNSLAQYVPSASNIRRYAEIVRERSILRKLVSASDEIATNAFNPQGKPVDKILDEAEQ KIFNIGEEGSRMKQGFQSMDALVVELLDRVTEMAENPNDITGVRTGFHDFDKMTSGLQPGDMIVLAARPSMGKTSLAINI AEHVALNEGLPVAVFSMEMGASQLAVRIVGSIGRIDQGHLRTGKLSDEEWPRLTEAIEKLRTVSLHIDETPGLSTSELRA NARRLARQYGRLGLIVVDYLQLMSTSSSGDENRATAVGEISRGLKMLAKELKCPVIALSQLSRGVESRTDKRPMMSDLRE SGAIEQDADIIMFIYRDDYYDKNSKEPGVAEVIISKHRNGPTGTIKLAFLKPITKFENLEGYSHSDQY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 1e-98 | 49 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 6e-85 | 43 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 2e-79 | 43 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 4e-84 | 42 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 3e-84 | 42 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 2e-80 | 42 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 2e-80 | 42 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 9e-82 | 41 |
