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Name : Varpa_1865 (Varpa_1865) Accession : YP_004154186.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Resistance Product : arsenical pump membrane protein Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1055 EC number : - Position : 2057894 - 2059186 bp Length : 1293 bp Strand : - Note : KEGG: ctt:CtCNB1_3139 arsenical pump membrane protein; TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein DNA sequence : ATGCTGCCGGCCGTCCTGATCTTCGTCTTCACGCTCGTGCTCGTCATCTGGCAGCCGCGAGGCCTCGGCATCGGCTGGAG TGCATCGCTCGGCGCGGCGATCGCCCTGTTCTCCGGCGTGGTCCAGCTCGCCGACATCGCGGTCGTCTGGGGTATCGTGT GGAACGCGACCGCGACCTTCGTCGCCGTCATCCTCATCAGCCTGCTGCTCGACGAAGCGGGCTTCTTCGAATGGGCCGCG CTGCACGTGGCGCGATGGGGCGACGGACGCGGCCGGTTGCTCTTCGGATTCATCGTGCTGCTGGGCGCCGCGGTGTCGGC GCTCTTCGCCAACGACGGCGCGGCGCTGATCCTCACGCCCATCGTGATGGCGATGCTCGTCGCACTCGGCTTCACGCCCG CCGCCACGCTCGCGTTCGTGGTGGCGGCCGGCTTCATTGCCGACACGGCCAGCCTGCCGCTGGTCGTGTCGAACCTGGTG AACATCGTCTCGGCCGACTTCTTCGGGATCGGCTTCAACGCCTATGCGTCGGTGATGGTCCCTGTGAACCTCGCGGCGGT GGCCGCGAGCCTCGTGATGCTGATGCTGTACTTCCGCCGCGGCATTCCCGCGCGCTACGACGTGGCGCAGCTCAAGGCGC CGGCCGATGCGATCCGAGACCCCGCAACATTCCGCGCGGGCTGGGTCGTGCTGGTGCTGCTGCTCGTGGGCTTCTTCGGA CTCGAACCGCTCGGCGTGCCGGTCAGCGCCGTGGCTGCCGCCGGTGCGGCGCTGCTGCTCGCGGTGGCTGCGCGCGGCCA TGTCATCAGCACGCGCAAGGTGCTGCATGGCGCGCCATGGCAGATCGTCGTGTTCTCGCTCGGCATGTACCTCGTGGTCT ACGGGCTGCGCAACGCGGGTCTCACGGCCCACATCGCCTCGCTGCTGAACGTGTTTGCGCAAGGCGGCGTCTGGGGCGCG GCCCTGGGCACAGGTTTTCTCGCCGCCGCGCTGTCTTCGGTGATGAACAACATGCCGACGGTGCTGGTCGGCGCTCTCTC CATCGATGCGTCGGGCGCGAGCGGCCTCGTGAAGGACGCGATGGTCTACGCCAACGTGATCGGCTGCGACCTCGGCCCGA AGATCACGCCCATCGGCAGCCTCGCCACGCTGCTCTGGCTGCATGTGCTCGAAAAGAAGGGCATGCGCATCGCCTGGGGC TATTACTTCAAGGTCGGCATCGTGCTGACCGTGCCGGTGTTGTTCGCGACGCTCGCGGCACTGGCCTTCCGGGTGAACCT CTCCCTGCCATGA Protein sequence : MLPAVLIFVFTLVLVIWQPRGLGIGWSASLGAAIALFSGVVQLADIAVVWGIVWNATATFVAVILISLLLDEAGFFEWAA LHVARWGDGRGRLLFGFIVLLGAAVSALFANDGAALILTPIVMAMLVALGFTPAATLAFVVAAGFIADTASLPLVVSNLV NIVSADFFGIGFNAYASVMVPVNLAAVAASLVMLMLYFRRGIPARYDVAQLKAPADAIRDPATFRAGWVVLVLLLVGFFG LEPLGVPVSAVAAAGAALLLAVAARGHVISTRKVLHGAPWQIVVFSLGMYLVVYGLRNAGLTAHIASLLNVFAQGGVWGA ALGTGFLAAALSSVMNNMPTVLVGALSIDASGASGLVKDAMVYANVIGCDLGPKITPIGSLATLLWLHVLEKKGMRIAWG YYFKVGIVLTVPVLFATLAALAFRVNLSLP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| arsB2 | YP_001007633.1 | arsenical pump membrane protein | Not tested | YAPI | Protein | 3e-124 | 76 |
| arsB | YP_252017.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 2e-91 | 57 |
| arsB | YP_005754065.1 | arsenical pump membrane protein | Not tested | Type-XI SCCmec | Protein | 2e-89 | 57 |
| SH0109 | YP_252024.1 | arsenical pump membrane protein | Not tested | SCCmec | Protein | 5e-91 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0578 | Protein | 6e-124 | 77 |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0576 | Protein | 5e-124 | 76 |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0577 | Protein | 9e-120 | 76 |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0031 | Protein | 6e-124 | 75 |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0574 | Protein | 5e-92 | 57 |
| Varpa_1865 | YP_004154186.1 | arsenical pump membrane protein | BAC0575 | Protein | 4e-92 | 56 |
