Gene Information

Name : Varpa_1852 (Varpa_1852)
Accession : YP_004154173.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 2042200 - 2042817 bp
Length : 618 bp
Strand : -
Note : KEGG: vap:Vapar_3944 two component transcriptional regulator LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR

DNA sequence : 
GTGAATGCCACCCTTGCCAACAACCTGTGCGTGGTCGACGACGACGAGGCCGTGCGCCGATCATTGGGCCTGTTGCTGCT
GTCGCGCGGCTACGCGGTGCAGACCTTCGCCTCGGGCGAGGCGTTCCTGGCCAGCGCCGACATCCAGCGCGCGGGCTGCG
TCGTGCTCGACCTGCGCATGGAAGGCATGAGCGGCCTGCAGGTGTTCGACGCGCTGCGCGCACAGGACAGCCCGCTGGTC
GTGCTGTTCCTCTCCGGCCACGGCGACATTCCGATGGCCATCGAGGCGGTGCAGAACGGCGCGTTCGGCTGGCTCGAGAA
GCCCTGCAACGACGAGCGCCTGCTCGAGAGCATCGCCAAGGCCTTGCAGCAGGCACAAGCCATTGCCGTGCGCCGGCAGG
CGCGGCAGGCCGCGCAGTTGCTGTGGGCCAAGCTCACGCCGCGCGAGATGCAGGTGGCCCGGCTGGTCGCCGAGGGCAAG
CCCAACAAGAAGATCGCGCTCGAACTCGCGCCGCTGGAACTGCGCACGGTGGAGACGCACCGCGCCCACGTGTTCGCCAA
GCTGGGCCTGTCGAACAGCCACGAGCTCGACCGGTTCCTGCGGGAACACGCACTCTAG

Protein sequence : 
MNATLANNLCVVDDDEAVRRSLGLLLLSRGYAVQTFASGEAFLASADIQRAGCVVLDLRMEGMSGLQVFDALRAQDSPLV
VLFLSGHGDIPMAIEAVQNGAFGWLEKPCNDERLLESIAKALQQAQAIAVRRQARQAAQLLWAKLTPREMQVARLVAEGK
PNKKIALELAPLELRTVETHRAHVFAKLGLSNSHELDRFLREHAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 8e-16 42
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 8e-16 42
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 8e-16 42
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 5e-16 42
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 9e-16 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_1852 YP_004154173.1 two component LuxR family transcriptional regulator VFG0488 Protein 3e-16 42