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Name : Varpa_1555 (Varpa_1555) Accession : YP_004153877.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : lysyL-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1726123 - 1727685 bp Length : 1563 bp Strand : - Note : KEGG: vap:Vapar_1410 lysyL-tRNA synthetase; TIGRFAM: lysyL-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type DNA sequence : ATGTCCGATCACCTGACCCCTCCCATTCCTACGCCCGCTGCAGCCGCTGCCGCAGCCCCCGCCGTCGACGACAACAAGCT CATTGCCGAACGCCGCGAAAAGCTCAAGCTGCTGCGCACCGCACAGGTCGAGGGCAAGGGCGTCGCGTTCCCCAACGACT TCAAGCCGGGCCATCGCGCCGCGGCGCTCGTCGCGGCGCACGATGCGGTCGAGGCCGAAGCGCTCGAGGCACAAGCCATT TCCGTCAGCGTGGCGGGCCGCATGATGCTCAAGCGCGTGATGGGCAAGGCCAGCTTCGCGACCCTGCAGGACGCCACCGG CCGCATCCAGCTCTACGTGACGCGCGACGCCGTCGGCGAAGAAGCCTACGCAGAGTTCAAGCGCTGGGACCTCGGCGACA TCCTGGGTGCCGAAGGCACGCTGATGAAGACCAAGACCGGCGAACTGTCGGTCAAGGTGACGAAGCTGCGTCTTCTCACC AAGAGCCTGCGCCCGCTCCCTGGCGATTTCTACGGCATGGCCGACCAGGAGCAGAAGTACCGCCAGCGCTACGTCGACCT GATCACCGACGAGGCGGCCCGCGTGCGCTTCACCGCACGCAGCAAGGCCGTGAGCGCCCTGCGCGAATTCATGGTCGCCA ACGACTTCCTCGAAGTCGAGACGCCCATGCTGCACCCGATTCCGGGCGGCGCGAACGCCAAGCCCTTCAAGACGCATCAC AACGCGCTCGACCAGGAGATGTTCCTGCGCATCGCGCCCGAGCTGTACCTGAAGCGCCTGATCGTCGGCGGCTTCGAGCG CGTGTTCGAAATCAACCGGAGCTACCGCAACGAAGGCATCTCGGTGCGGCACAACCCCGAGTTCACGATGATGGAGTTCT ACGCGGCCTACTGGAACTACCGCGACCTGATGGACTTCACCGAGACGCTGATCCGCACCATCGCCGACAAGGCCGTGGGC TCGCAGCAGCTGACGTACGGCGGCAAGCCCGTCGACCTGAGCCAGCCCTTCGAGCGGCTGACGATCCGCGAAGCGATCCT GAAGCACACCGACGCCGGCGATGGCGTGGACGACACCGCTTGGCTCATCAACGGCCTGCGCAAGCTCGGCCTGAGCGAAG AAAAAGACAAGCTTTCGCAGCGCAGCCTCGCGAGCCTGCAGGTGATGTATTTCGAAGAGACCGTTGAAGAGAAGCTTTGG CAGCCGACCTTCATCATGGAACACCCGACCGAGATCTCGCCGCTGGCACGCGCCAACGACGAGCGCCCCGAGGTCACCGA GCGCTTCGAGCTCTACATCACGGGCCGCGAATTCGGCAACGGCTTCAGCGAGCTGAACGATGCCGAAGACCAGGCCGCCC GCTTCAACGCGCAGGTGGCCGCCAAGGACAGCGGCGACGACGAAGCGATGTACTACGACCACGACTTCGTGCGCGCGCTC GAATACGGCATGCCGCCCACCGGCGGCTGCGGCATCGGCATCGACCGGCTGATGATGCTGCTGACCGATTCGCCGAGCAT CCGCGACGTGATCCTGTTCCCGGCGCTTCGGCGGGAACTCTGA Protein sequence : MSDHLTPPIPTPAAAAAAAPAVDDNKLIAERREKLKLLRTAQVEGKGVAFPNDFKPGHRAAALVAAHDAVEAEALEAQAI SVSVAGRMMLKRVMGKASFATLQDATGRIQLYVTRDAVGEEAYAEFKRWDLGDILGAEGTLMKTKTGELSVKVTKLRLLT KSLRPLPGDFYGMADQEQKYRQRYVDLITDEAARVRFTARSKAVSALREFMVANDFLEVETPMLHPIPGGANAKPFKTHH NALDQEMFLRIAPELYLKRLIVGGFERVFEINRSYRNEGISVRHNPEFTMMEFYAAYWNYRDLMDFTETLIRTIADKAVG SQQLTYGGKPVDLSQPFERLTIREAILKHTDAGDGVDDTAWLINGLRKLGLSEEKDKLSQRSLASLQVMYFEETVEEKLW QPTFIMEHPTEISPLARANDERPEVTERFELYITGREFGNGFSELNDAEDQAARFNAQVAAKDSGDDEAMYYDHDFVRAL EYGMPPTGGCGIGIDRLMMLLTDSPSIRDVILFPALRREL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-129 | 55 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-76 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_1555 | YP_004153877.1 | lysyL-tRNA synthetase | VFG1668 | Protein | 4e-129 | 55 |
