Gene Information

Name : Varpa_1400 (Varpa_1400)
Accession : YP_004153727.1
Strain : Variovorax paradoxus EPS
Genome accession: NC_014931
Putative virulence/resistance : Virulence
Product : utp-glucose-1-phosphate uridylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1210
EC number : -
Position : 1556988 - 1557878 bp
Length : 891 bp
Strand : -
Note : KEGG: vap:Vapar_1299 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase

DNA sequence : 
ATGTCCACTTCCTCGACACGCATCCGCAAGGCCGTATTTCCTGTTGCTGGCTTTGGCACCCGCTTTCTGCCAGCCACCAA
GGCACAACCGAAGGAAATGCTGCCGGTGGTCGACAAGCCGCTGATCCAGTACGCCGTCGAAGAAGCCTATGCCGCAGGCA
TCCGCGACATGATTTTTGTGACCGGCCGCAACAAGCGTGCGATCGAAGATCACTACGACACCGCCTACGAACTCGAAAGC
CAGCTCGAAGCCAGCGGCAAGGATGCGCTGCTGAACATCGCCCGCTCGGTGATGCCCGACGACATGACCTGCTCCTACGT
GCGCCAGCCGCGCATGCTGGGTCTCGGCCATGCCGTGCTGTGCGCCGAGCACCTGGTCGGCAACGAGCCCTTCGCCGTGC
TGCTGGCCGACGACTTGATGGTCGGTCCCGAGGGCGGCGAGCCGGTGCTCGCGCAGATGACGGCCGCATTCGCGCGCCTG
GGCGGCTCGCTGCTGGCGGTGCAGGAAGTGCCGCTCGCGCACGTCAAGCGCTACGGCATCGTGGCCGGCGAGCAGATCGA
AGAGGGCCTCGTTAAGGTCAACCGCATGGTCGAGAAGCCGAAGCCAGAAGACGCGCCTTCGCGCCTGGGCGTGGCCGGCC
GCTACATCCTCACGCCGGGCGTGTTCGACGAAATCCGCAACCAGCCCAAGGGCGCGGGCGGCGAGATCCAGTTGACAGAC
GGCATCGCGGCGCTGATGAAGAAGGAATCGGTCTACGCCTATTCCTACAAGGGCATCCGCTACGACTGCGGCAGCAAGGA
AGGCTTCCTGCAAGCCAGCGTGGAACTGGCGCTCGCGCACCCCGAGGTGGGCGCCGAATTCCGCGAATACCTCAAGAGCC
TGAAGCTCTGA

Protein sequence : 
MSTSSTRIRKAVFPVAGFGTRFLPATKAQPKEMLPVVDKPLIQYAVEEAYAAGIRDMIFVTGRNKRAIEDHYDTAYELES
QLEASGKDALLNIARSVMPDDMTCSYVRQPRMLGLGHAVLCAEHLVGNEPFAVLLADDLMVGPEGGEPVLAQMTAAFARL
GGSLLAVQEVPLAHVKRYGIVAGEQIEEGLVKVNRMVEKPKPEDAPSRLGVAGRYILTPGVFDEIRNQPKGAGGEIQLTD
GIAALMKKESVYAYSYKGIRYDCGSKEGFLQASVELALAHPEVGAEFREYLKSLKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0059 YP_300149.1 UTP-glucose-1-phosphate uridylyltransferase Not tested SCC15305cap Protein 4e-61 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Varpa_1400 YP_004153727.1 utp-glucose-1-phosphate uridylyltransferase VFG0964 Protein 9e-66 48