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Name : Varpa_1155 (Varpa_1155) Accession : YP_004153484.1 Strain : Variovorax paradoxus EPS Genome accession: NC_014931 Putative virulence/resistance : Virulence Product : general secretory pathway protein e Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1299882 - 1301279 bp Length : 1398 bp Strand : - Note : TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: vap:Vapar_1072 general secretory pathway protein E; SMART: AAA ATPase DNA sequence : ATGTCCATGCGCTACCCGCTTCCCTACGCGTTCGCACGCAGCCAGCAACTCCTTCTCGAAGAGGCCGACGACGGCCGCTA CACGCTGTGGATGTCGGACCACCCCGCGCGCAGCGCGGTCGGCGAAGTGGCGCGCAAGTACAGCGTGCAGGCCTTCGAGG TGCTGGCCGATGCACCGCTCGCGCAGCGCATCAGCGCGGCCTATTCGCAGGGCGAATCGAGCGCCGCCGCGGTCGTGAGC GAAGTGCAGAACGACGCCGACCTCTCGCGCATGATGCAGGAGCTGCCGGCGGTTGAAGACTTGCTGGCCAGCGCGGGCGA CGCGCCCATCATCCGCATGCTCAACGCGCTGCTCACGCAGGCCGCGCGCGACGGCGCGAGCGACATCCACATCGAGCCCT ACGAGCGCACCTCGTCCGTGCGCTTTCGCATCGACGGCACGCTGCGCGAAGTGGTGCAGCCCAACCGCGCGCTGCACGCC GCGCTGATCTCGCGCCTGAAGATCATGGCCGACCTCGACATCTCCGAGAAGCGGCTGCCGCAGGACGGGCGCATCAGCCT GCGCATCGGCACGCGTGCGGTCGACGTGCGCGTCTCCACGCTGCCGAGCGCGCACGGCGAACGCGCCGTGCTGCGCCTCC TGGACAAGAGCGAATCGAAGCTCACTCTCGAATCGGTGGGCATGCTGGGCGACACGCTGCAGCGCTTCGAAAAGCTCATC ACGCAGCCGCACGGCATCATCCTGGTGACCGGGCCGACCGGCTCGGGCAAGACCACCACGCTGTATGCCGCGCTGGCCCG GCTCGATGCGAGCCGCAGCAACATCATGACGGTGGAAGACCCCATCGAGTACGAGCTGCCGGGCGTGGGCCAGACGCAGA TCAACGCGAAGATCGAGCTGACTTTCGCGAAGGCCCTGCGCGCCATCCTCCGGCAAGACCCGGACGTGATCATGATCGGC GAAATCCGCGACTTCGAGACCGCGCAGATCGCCATCCAGGCCTCGCTCACCGGCCACCTGGTGCTCGCGACGCTGCACAC CAACGACTCGGTCAGCGCCGTCACACGCCTCACCGACATGGGTGTCGAGCCTTTCCTCTTGAGTTCATCGCTTCTGGGCG TGCTCGCGCAGCGCCTCGTGCGCAAGGTCTGCACGAGTTGCGCGGGCGCGGGCTGCGATGTCTGCGGGCAAACGGGCTAC CAGGGCCGCACCGGCATCTTCGAATTGCTGGTGGCCGATGAAACCGTGCAGGGCCTCATCCACAGCAAGGCCGCCGAGAG CGAACTGCTCAAGGCCGGCGCGCTCGGCGGCCTGCGCCTGATGCGCGAAGACGGCGAACGGCTGGTGCAGGCCGGCATCA CTTCGCGCGCAGAACTGCTGCGCGTGACACGCGATTAG Protein sequence : MSMRYPLPYAFARSQQLLLEEADDGRYTLWMSDHPARSAVGEVARKYSVQAFEVLADAPLAQRISAAYSQGESSAAAVVS EVQNDADLSRMMQELPAVEDLLASAGDAPIIRMLNALLTQAARDGASDIHIEPYERTSSVRFRIDGTLREVVQPNRALHA ALISRLKIMADLDISEKRLPQDGRISLRIGTRAVDVRVSTLPSAHGERAVLRLLDKSESKLTLESVGMLGDTLQRFEKLI TQPHGIILVTGPTGSGKTTTLYAALARLDASRSNIMTVEDPIEYELPGVGQTQINAKIELTFAKALRAILRQDPDVIMIG EIRDFETAQIAIQASLTGHLVLATLHTNDSVSAVTRLTDMGVEPFLLSSSLLGVLAQRLVRKVCTSCAGAGCDVCGQTGY QGRTGIFELLVADETVQGLIHSKAAESELLKAGALGGLRLMREDGERLVQAGITSRAELLRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-104 | 51 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-104 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Varpa_1155 | YP_004153484.1 | general secretory pathway protein e | VFG1876 | Protein | 2e-110 | 51 |
| Varpa_1155 | YP_004153484.1 | general secretory pathway protein e | VFG0182 | Protein | 2e-113 | 51 |
| Varpa_1155 | YP_004153484.1 | general secretory pathway protein e | VFG2048 | Protein | 4e-103 | 50 |
| Varpa_1155 | YP_004153484.1 | general secretory pathway protein e | VFG2426 | Protein | 1e-64 | 46 |
