Gene Information

Name : Theam_1448 (Theam_1448)
Accession : YP_004152051.1
Strain : Thermovibrio ammonificans HB-1
Genome accession: NC_014926
Putative virulence/resistance : Virulence
Product : ATPase, FliI/YscN family
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1415740 - 1417080 bp
Length : 1341 bp
Strand : -
Note : TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: pmx:PERMA_0715 flagellar protein export ATPase FliI; SMART: AAA ATPase

DNA sequence :
ATGAGCTTAAAAGAGAGGCTAAGAAGGCTGCCCAGGTATAAGGTTGTGGGGCAGGTTACCGGCGTTAAGGGGGAGGTTAT
AGAGGCGAAGCTCCCCGGCGTCTGTATAGGGGACTTCTGCACGGTTGACGGAAAGCTTCCTGCGGAAGTTGTTGGGTTTA
AAGAGGGTAAGGCCCTGCTTATGGCCTACAGCGATACAGACGGTATAACCACGGGTAACCCCGTTGAGGTGAAGCTCTCG
GGGCTGAAACTGGGGGTGTCGGACGAGCTGCTTGGTGCGGTTATAGACCCCTTCGGTAAGGTTTTAAACGGGAAAGAATT
CACCCCGACCGACTTCGTTCCCCTGAAACCCGACCCGGTTAACCCTATGGAGCGGGAGAGGATAAGGGAGCCCCTTGATT
TGGGCATCAGAGTGATAAACGGCCTGCTCACCGTAGGCAGGGGGCAAAGACTCGGGGTGTTTGCGGGTGCCGGGGTTGGC
AAGAGTACCCTGCTGGGAATGGTTGCCCGCTACACCGAGGCAGACGTTACCGTAGTTGCCCTCATCGGTGAGCGGGGAAG
GGAGGTAAGGGAGTTCTTGGAGGATGCCCTCGGTGACGGCATAAACCGCTCGGTTGTGGTTGTTGCGACTTCCGATATGC
CTCCCCTTGCAAAGGTGAGGGCCGCTTATGCCGCTTTTGCAGTTGCCGAGTACTTCTCCGCCCGGGGTAAGAAAGTTCTG
CTTTTGCTCGACTCCCTTACCCGCTTTGCAATGGCCCAGAGGGAAATCGGGCTTTCTGTTGGGGAGCCGCCCACTTCAAA
GGGCTACACCCCTTCGGTTTTCTCTGCCATGGCAAGGCTCGTTGAGAGGGCCGGGAACTTCGGCTCGGGCGGCAGTATTA
CCGGGATATTTACGGTTTTGGTGGAGGGAGACGACATCTCCCTCGACCCCGTTGCAGATGCCGCCGTCGGTCTTTTAGAC
GGTCATATAGTTCTGTCGAGGGAGATGGCAAACAGGCGCCTCTTCCCTGCGGTAGATGTTTTAAAGAGCATCAGCAGGCT
TACCCCCCAGATAGTTCCCGAAGAGATACTTACTGCACAGTCGGTTATTTTTGAACTTGAATCTATTTACAGGGAAAATA
GCGACCTCATTCAGCTCGGCCTCTATAAAAAGGGCACCTCTCCCCTGATTGACCTTGCCATCTGGGCCCACTCAAGGCTT
GAAGGTTACATAAGGCAGGGTATAAACCAACGGGTTAACCTAAAGGAGAGTTTTGAGCAGCTACTCAGTTTGGTAAACTC
AATTCTTGAGGAGGGAAGTCGCCATGGCGTTAGATGGAATAACGGCCAGTTTGAATACTGA

Protein sequence :
MSLKERLRRLPRYKVVGQVTGVKGEVIEAKLPGVCIGDFCTVDGKLPAEVVGFKEGKALLMAYSDTDGITTGNPVEVKLS
GLKLGVSDELLGAVIDPFGKVLNGKEFTPTDFVPLKPDPVNPMERERIREPLDLGIRVINGLLTVGRGQRLGVFAGAGVG
KSTLLGMVARYTEADVTVVALIGERGREVREFLEDALGDGINRSVVVVATSDMPPLAKVRAAYAAFAVAEYFSARGKKVL
LLLDSLTRFAMAQREIGLSVGEPPTSKGYTPSVFSAMARLVERAGNFGSGGSITGIFTVLVEGDDISLDPVADAAVGLLD
GHIVLSREMANRRLFPAVDVLKSISRLTPQIVPEEILTAQSVIFELESIYRENSDLIQLGLYKKGTSPLIDLAIWAHSRL
EGYIRQGINQRVNLKESFEQLLSLVNSILEEGSRHGVRWNNGQFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-74 48
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-63 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-67 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-70 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-66 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-66 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-67 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-68 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-67 45
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 7e-68 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-68 45
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-68 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-68 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-71 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-64 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-70 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-70 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-73 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 7e-66 43
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 7e-66 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-71 43
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 5e-72 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-64 43
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 5e-64 43
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-64 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-64 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-65 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-71 42
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-61 42
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-61 42
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG1254 Protein 3e-75 51
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG0390 Protein 1e-73 48
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG0192 Protein 9e-73 47
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG2331 Protein 3e-72 47
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG0048 Protein 3e-70 46
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG2144 Protein 1e-70 46
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG2499 Protein 1e-70 46
Theam_1448 YP_004152051.1 ATPase, FliI/YscN family VFG0515 Protein 6e-65 43