Gene Information

Name : Theam_1370 (Theam_1370)
Accession : YP_004151974.1
Strain : Thermovibrio ammonificans HB-1
Genome accession: NC_014926
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1338903 - 1340231 bp
Length : 1329 bp
Strand : -
Note : KEGG: pmx:PERMA_1425 type 4 fimbriae expression regulatory protein PilR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
GTGAAGGTTCTGATTCTCGAGGATGAGGTCTCTCTGAGGGAGATTCTGAAGATTGTCCTGGAGGAGTTCGGCTACCAGGT
TGAAGAGGCCGGAACGCTGTCGGAGGCCGTTAAGAAGGTGGAGGAGTCTTACTTCGACCTGATACTCGTTGACCTACGCC
TTCCCGACGGCTCGGGTATGGAGCTTGTAAGGAGGGTAAAGGGGGAGACCCCCGACACCGAAGTGATAATAATAACGGCC
TTTGCCTCTACCCAGACTGTTAAAGAGGCCTTTGAGCTCGGCGTTTACGACTACGTTGAGAAGCCTTTCCAGATAGACGA
GCTTCGAATCCTCATAAGGAACGTCACCGACAAGATAAAGCTGAAAAAAAACAAAGAGGAAGTTCCCGGCCTTCTCGGCC
GCTCTGCGGCCGTAGAGAGACTTAAGGAGACCATAAAGAAAATCGCCCCTTACGACGTGAACGTTTTAATTCTCGGAGAG
AGCGGAACGGGTAAGGAGGTTGTTGCGAGGGCGATTCACCAACTCAGCCCCCGTAAGGATAAGCCCTTCGTTGCAATCAA
CTGTGCGGCCCTGCCCCCCGAGCTCCTCGAGAGCGAGCTGTTCGGCTATAAAAAGGGGGCCTTTACCGGAGCGACTTCCG
ATAAGAAGGGGCTTATAGAGAAGGCAGACGGAGGGACGCTCTTTTTAGACGAAATAGGCGACATGCCGCTGCCCTTACAG
GCCAAGCTCTTAAGGTTTCTTGAGACCAAGAAGTTCATCCCCCTCGGCTCTACAGAGGAAAAGAGCGTAGATGTGAGAAT
CGTCTCTGCAACTAACAAAGACCTGAAAGAGGAAATAAAGAGGGGAAACTTCCGGGAAGACCTCTACTACAGGCTTGCCA
CCATTGTTGTTGAGCTTCCCCCCTTGAGGGAGAGGCGGGAGGATATCCCGATTCTCGTGGAGCACTTTGCCAGGGAGTTT
GCCTCCAAGTACGGTAAACAGGTAAAGAGAATCTCGAGCAGCTTTATAGAGTATTTAATGTCGCTTCCCCTTGAGGGTAA
CGTTAGGGAGCTTCGCAACATAGTAGAGAGAGAAGTTATCCTGATGGATGGAGGAGTTCTTGGGGCCGGCCACTCCAGCG
GCTCTTTGGGGTCTGTGGCCTCCGTTAAGATTCCCGATGAGGGGGTTGACCTTAAAAAGCTCCTTCAAGAGATTGAGAGA
AGCTACCTCCTTGCTGCCCTTGAGAAGGCGGGAGGCAAGAAGAAAAAGGCTGCCGAGCTTCTCGGCCTTACCTTTAGGGA
GTTTCGCTACAGGTTTGGGAAACTGGTAGATAGGGAGGGGGAGGAGTAG

Protein sequence : 
MKVLILEDEVSLREILKIVLEEFGYQVEEAGTLSEAVKKVEESYFDLILVDLRLPDGSGMELVRRVKGETPDTEVIIITA
FASTQTVKEAFELGVYDYVEKPFQIDELRILIRNVTDKIKLKKNKEEVPGLLGRSAAVERLKETIKKIAPYDVNVLILGE
SGTGKEVVARAIHQLSPRKDKPFVAINCAALPPELLESELFGYKKGAFTGATSDKKGLIEKADGGTLFLDEIGDMPLPLQ
AKLLRFLETKKFIPLGSTEEKSVDVRIVSATNKDLKEEIKRGNFREDLYYRLATIVVELPPLRERREDIPILVEHFAREF
ASKYGKQVKRISSSFIEYLMSLPLEGNVRELRNIVEREVILMDGGVLGAGHSSGSLGSVASVKIPDEGVDLKKLLQEIER
SYLLAALEKAGGKKKKAAELLGLTFREFRYRFGKLVDREGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-65 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-65 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Theam_1370 YP_004151974.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0467 Protein 2e-68 43
Theam_1370 YP_004151974.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0089 Protein 8e-69 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Theam_1370 YP_004151974.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 6e-68 43
Theam_1370 YP_004151974.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG0116 Protein 4e-64 43