Gene Information

Name : SPSINT_0234 (SPSINT_0234)
Accession : YP_004148399.1
Strain : Staphylococcus pseudintermedius HKU10-03
Genome accession: NC_014925
Putative virulence/resistance : Virulence
Product : beta-hemolysin
Function : -
COG functional category : R : General function prediction only
COG ID : COG3568
EC number : -
Position : 269522 - 270457 bp
Length : 936 bp
Strand : -
Note : -

DNA sequence : 
ATGCTTTTAGGTATCATGAATACTGGCGTTAGCCATGCTGCTTCAGACGAAAATCAAGCGGAATTAAAATTAGCGACGCA
CAATGTTTATATGCTTTCTGGTTTCCTTTATCCTAACTGGGGGCAAAGTAAGCGTGCAGATTTAATTTCAAAATCTAAAT
ATATACAAGATAATGATGTCGTAATTTTCAATGAAGCATTCTATCCTGCTTCAGCAAATCAACTGTTCAATAATCTAAAA
TCTTCTTATCCTTATCAAACTGCGGTACTTGGCCGTTCCACTTCAGGATGGGACCGCACTGAAGGTCATTATTCAAGTAC
GACTTTTGAAAATGGTGGTGTTGCTATCGTAAGTAAATACCCTATTAGAGAGCGAATTCAACATATCTTCCAGCACGGAT
GCGGCTTTGATAATGATAGTAATAAAGGCTTTGTCTATACTAAAATTGAAAAAAATGGAAAATTCGTTCACGTTATCGGT
ACACACACACAATCTGAGGATACACGCTGCTCAGTAGGTCAAGATAGAGCAATTAGAGCTGAACAAATGAAAGAAATTAG
CAATTTTGTAAAAAGTAAAAATATCCCTAAAGATGAAGTAGTTTACATCGGTGGTGATATGAATGTAAATAAAAATGCTG
GAAATGGTGAATTCCAAGACATGTTGAAAAACTTAAATGTCAGCGATGTAACTTATACAGGTCATTCAAGCACATGGGAT
CCTCAATCTAACTCAATTGCCAAATACAATTATCCTAATAGTGCGCCAGAGTATTTAGACTATATTTTTGTAGATAAAGA
CCATCGCCAACCAGGCCAACTCATTAATGAAGCTGTAGCTGAAAAATCACCAACTTGGGATGTTTATAAATTCCCATACC
TTTATGTCTACAATGACTACTCTGATCACTATCCAGTAAAAGCGTATAGTAAATAA

Protein sequence : 
MLLGIMNTGVSHAASDENQAELKLATHNVYMLSGFLYPNWGQSKRADLISKSKYIQDNDVVIFNEAFYPASANQLFNNLK
SSYPYQTAVLGRSTSGWDRTEGHYSSTTFENGGVAIVSKYPIRERIQHIFQHGCGFDNDSNKGFVYTKIEKNGKFVHVIG
THTQSEDTRCSVGQDRAIRAEQMKEISNFVKSKNIPKDEVVYIGGDMNVNKNAGNGEFQDMLKNLNVSDVTYTGHSSTWD
PQSNSIAKYNYPNSAPEYLDYIFVDKDHRQPGQLINEAVAEKSPTWDVYKFPYLYVYNDYSDHYPVKAYSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlb NP_646757.1 truncated beta-hemplysin Not tested ¥ÕSa3 Protein 1e-100 77
truncated-hlb NP_372527.1 hypothetical protein Not tested ¥ÕSa3 Protein 4e-100 77
hlb NP_375112.1 hypothetical protein Not tested ¥ÕSa3 Protein 2e-100 77
unnamed CAA70683.2 sphingomyelinase-c Virulence LIPI-2 Protein 2e-71 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPSINT_0234 YP_004148399.1 beta-hemolysin VFG1798 Protein 2e-109 75
SPSINT_0234 YP_004148399.1 beta-hemolysin VFG0674 Protein 1e-71 54