Gene Information

Name : Psesu_0553 (Psesu_0553)
Accession : YP_004145642.1
Strain : Pseudoxanthomonas suwonensis 11-1
Genome accession: NC_014924
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 608870 - 610267 bp
Length : 1398 bp
Strand : -
Note : KEGG: xal:XALc_0668 probable two-component system response regulator protein pilr; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA

DNA sequence : 
ATGAATCAAGCCCGCAGCGCCCTGATCGTCGACGACGAACGTGATATCCGCGAACTGCTGGTGCTGACCCTCGGGCGCAT
GGGCCTGCGCGTGGATACCGCCGCCAACCTGGCCGAGGCGCGCGAGCTGCTGGGATCCCACCGCTACGACCTCTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTGGTGGAGATCGCGCGCAACCACCCGCACACCCCGGTGGCG
ATGATCACCGCCTTCGGCAACATGGACCTGGCGGTGGAGGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACCTCAACGTGCTGCGCGGCCTGGTCCGCCACGCGCTGGAACTGAACAACGCCGAGCGCCCGGCCAAACCGGCGCAGC
CCGAACAGGGCCGCCTGATCGGCGACTCCCCGGCCATGCAGGCCCTGCGCGGCACCATCGCCAAGGTCGCCCGCAGCCAG
GCGCCGGTGTACATCCTCGGCGAGTCCGGCGTGGGCAAGGAGCTGGTGGCCCGCACCATCCACGAGCAGGGCGCCCGCGC
GTCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTGGACGAGGTC
GCCGAGCTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCGCGGCCAG
CGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGCGCTGGCCGACCTGGTGGGCGAGGGCCGCTTCCGCC
ACGACCTCTACTACCGCATCAACGTGATCGAACTGCGGGTTCCGCCGCTGCGCGAGCGCGCCGGCGACCTGCCGCAGCTG
GCCGCGGCGATCCTGGCCCGGCTGTCCGCGGCCCAGGGCCGGCCCACGCCCCAGCTGGGCGAGGACGCACTGGCGGCGCT
GGCGCGATATCCGTTCCCGGGCAACGTGCGCGAGCTGGAGAACGTGCTCGAGCGCGCCCTGGCGCTGGCCGAGGGCGACC
ATATCGACGTGGTCGACCTGCACCTGCCGCAGGCCCCGGTACGCACGGCCAGCCCTGCCGCGGCGACGGCCGAGGCCATC
CCGGCCCAGGCCCCGCTGCCGGCAGCCGCAGCCGAGGCTTCCGGTGGCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCG
CGCCGCGATCCAGAAGGCGCTGGAAGACAACCGCTGGAACAAGACCCGCGCCGCGGCGCAGCTGGGCATCACCTTCCGCG
CCCTGCGCTACAAGCTCAAGAAGCTGGGCATGGAGTAA

Protein sequence : 
MNQARSALIVDDERDIRELLVLTLGRMGLRVDTAANLAEARELLGSHRYDLCFTDMRLPDGNGIELVVEIARNHPHTPVA
MITAFGNMDLAVEALKAGAFDFVSKPVDLNVLRGLVRHALELNNAERPAKPAQPEQGRLIGDSPAMQALRGTIAKVARSQ
APVYILGESGVGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAASGGTLFLDEV
AELPLSMQVKLLRAIQEKSVRPVGAASEVPVDVRILSATHKALADLVGEGRFRHDLYYRINVIELRVPPLRERAGDLPQL
AAAILARLSAAQGRPTPQLGEDALAALARYPFPGNVRELENVLERALALAEGDHIDVVDLHLPQAPVRTASPAAATAEAI
PAQAPLPAAAAEASGGALPSYIEQLERAAIQKALEDNRWNKTRAAAQLGITFRALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-102 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-102 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psesu_0553 YP_004145642.1 Fis family transcriptional regulator BAC0467 Protein 2e-66 45
Psesu_0553 YP_004145642.1 Fis family transcriptional regulator BAC0089 Protein 5e-70 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psesu_0553 YP_004145642.1 Fis family transcriptional regulator VFG1214 Protein 6e-127 63
Psesu_0553 YP_004145642.1 Fis family transcriptional regulator VFG0116 Protein 2e-60 44
Psesu_0553 YP_004145642.1 Fis family transcriptional regulator VFG1249 Protein 4e-62 43