Gene Information

Name : Psesu_2550 (Psesu_2550)
Accession : YP_004147613.1
Strain : Pseudoxanthomonas suwonensis 11-1
Genome accession: NC_014924
Putative virulence/resistance : Resistance
Product : D-Ala-D-Ala dipeptidase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2173
EC number : 3.4.13.22
Position : 2798114 - 2798806 bp
Length : 693 bp
Strand : -
Note : KEGG: smt:Smal_0344 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase

DNA sequence : 
ATGCGCTCCCGCCTGCTGGCACTCCTGCTGCTGGCGCCGGCCGCCATGGCCTGCGAGGTGCAGGTGTCGCCGGCGGAGAC
GGCCGCGGAGGCCGGGCTGGCCGAGGTGCGCACGCTGGGGCCCGGCATCCGGGTCGAGGCGCGCTACTCCGGCCCCAACA
ACTTCACTGGCGCCCCCGTGCCCGGCTACGAGGCCGACGCCTGCCTGCTGCTGCCGCAGGTGGCCGGGGCCCTCGCCCAG
GTGCAGCTGGACCTGCAGGCCGAAGGGCTGGGCCTGCTGGTCTACGACTGCTACCGCCCGGTGACCGCGGTGGAGGCGTT
CATGGACTGGGCCGAAGAGCCCGACGATCCGCGGCAGAAGGCCCGCTGGTATCCGCGGGTGGACAAGCACAGCCTGGTGC
CCGGCTACATCGCCGATACCTCCGGCCACAGCCGCGGCGCCACCGTGGACCTGACCCTGGTCCGTTGCAGCGATGCCGGC
TGCGAGCCGCTGTCCATGGGCACGCCGTTCGACTTCTTCGACCCGGCTGCGCATACCGGCGCGCCGGTGGGCGCGGAGCA
GCAGGCCAACCGCGAGCGCCTGCTTGCGGCGATGGAGGCGCGGGGTTTCCGCAACTACCCGCAGGAGTGGTGGCATTACA
CCTTCCAGCCCGAGCCGGATCCGTGCACCGCCTACGACGTGCCGGTGCGCTGA

Protein sequence : 
MRSRLLALLLLAPAAMACEVQVSPAETAAEAGLAEVRTLGPGIRVEARYSGPNNFTGAPVPGYEADACLLLPQVAGALAQ
VQLDLQAEGLGLLVYDCYRPVTAVEAFMDWAEEPDDPRQKARWYPRVDKHSLVPGYIADTSGHSRGATVDLTLVRCSDAG
CEPLSMGTPFDFFDPAAHTGAPVGAEQQANRERLLAAMEARGFRNYPQEWWHYTFQPEPDPCTAYDVPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanXB YP_008394260.1 D-alanyl-D-alanine dipeptidase Not tested Not named Protein 3e-30 41
vanX NP_815950.1 D-alanyl-D-alanine dipeptidase Not tested Not named Protein 3e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psesu_2550 YP_004147613.1 D-Ala-D-Ala dipeptidase AE016830.1.gene2249. Protein 1e-30 41
Psesu_2550 YP_004147613.1 D-Ala-D-Ala dipeptidase U35369.1.gene7.p01 Protein 2e-30 41
Psesu_2550 YP_004147613.1 D-Ala-D-Ala dipeptidase AF310956.2.orf6.gene Protein 1e-30 41
Psesu_2550 YP_004147613.1 D-Ala-D-Ala dipeptidase AF155139.2.orf6.gene Protein 2e-30 41