Gene Information

Name : Psesu_1928 (Psesu_1928)
Accession : YP_004146997.1
Strain : Pseudoxanthomonas suwonensis 11-1
Genome accession: NC_014924
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2131128 - 2132135 bp
Length : 1008 bp
Strand : +
Note : KEGG: xca:xccb100_0369 tyrosine recombinase; TIGRFAM: integron integrase; PFAM: integrase family protein

DNA sequence : 
ATGTCTTATGACGGCGAGGATGCCGCGATAACAGGGTGCGTAACGCCGCCCGGTGGGCCGCGGCTTCTGGACCAGGTGCG
CGGGCGTCTGCGCCTGAAGCACTACAGCCTGCGCACGGAGCAGGCATATCTGTACTGGATCCGGCGGTATGTTCGGGCGT
GGCTGCCGCGGCATCCGGCGGAGCTGGACGGGGCGGCGGTGGAGGCGTTCCTCACCGGGCTGGCCACGCGGGACAACGTG
GCGGCCAGCACCCAGAACCAGGCGCTGGCCGCCCTGCTCTTCCTCTATCGGGAGGTGCTGGGCATCGAGCTGCCGTGGAT
GGAGAACGTGGTCCGTGCCAAGCGGCCGCGGCGGCTGCCGGTGGTGCTGTCGCGCGCTCAGGTGGTGCGGCTGCTGGAGC
GCCTGTCCGGGCGGGAGGCGTTGATGGCCGGGCTGCTCTACGGCAGCGGGCTGCGCCTGATGGAGTGCGCGCGGCTGCGG
GTCAAGGACGTGGACCTGGAGCGCAACGAGCTGACCATCCGCGATGGCAAGGGCGGCAAGGACCGGATGACGGTGCTCCC
GGGCGCGCTGCGCGAGGCGCTGCTGCGCCAGCTGGCGGAGGTGCGCCTGCTGCACGCGCGCGACCTGGCCTGCGGACTGG
GCCGGGTGCACCTGCCGCACGCGCTGGCACGCAAGTATCCCAACGCGGCCGCGGAGCCGGGATGGCAGTACGTGTTCCCG
GCCACGCGCATTTCGGTCGACCCGCGCGACGGGGTGAGGCGGCGCCACCATATCGACGAGAAGGTGCTGCAGTCGGCGGT
GCGCCGGGCGGCGCGCGAAGCCGGCTTCGACAAGCCGGTCACCCCGCACACCCTGCGCCACTGTTTCGCCACGCACCTGC
TGGAGTCTGGCGCCGACATCCGCACGGTGCAGGAGCTGCTGGGCCACAAGGACGTGGCCACCACCCAGATCTACACGCAC
GTGCTCAACCGCGGCGCGCTCGGTGTGCTCAGTCCGCTGGACCGTTGA

Protein sequence : 
MSYDGEDAAITGCVTPPGGPRLLDQVRGRLRLKHYSLRTEQAYLYWIRRYVRAWLPRHPAELDGAAVEAFLTGLATRDNV
AASTQNQALAALLFLYREVLGIELPWMENVVRAKRPRRLPVVLSRAQVVRLLERLSGREALMAGLLYGSGLRLMECARLR
VKDVDLERNELTIRDGKGGKDRMTVLPGALREALLRQLAEVRLLHARDLACGLGRVHLPHALARKYPNAAAEPGWQYVFP
ATRISVDPRDGVRRRHHIDEKVLQSAVRRAAREAGFDKPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTH
VLNRGALGVLSPLDR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-53 53
int1 YP_005160012.1 integrase Not tested Not named Protein 2e-57 53
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-69 52
intI YP_001844881.1 integrase Not tested AbaR20 Protein 9e-70 52
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 4e-70 52
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 7e-70 52
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-69 52
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 9e-70 52
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 4e-70 52
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-69 52
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 9e-70 52
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 9e-70 52
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-69 52
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 6e-70 52
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-69 52
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-69 52
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-69 52
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 7e-70 52
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-69 52
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-69 52
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 7e-70 52
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 7e-70 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psesu_1928 YP_004146997.1 integron integrase VFG1028 Protein 9e-70 52