Gene Information

Name : Mesci_2349 (Mesci_2349)
Accession : YP_004141546.1
Strain : Mesorhizobium ciceri WSM1271
Genome accession: NC_014923
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2450921 - 2452186 bp
Length : 1266 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: mlo:mll6432 symbiosis island integrase

DNA sequence :
ATGGCCCTTTCCGACGTAAAATGCCGAAATGCCCGACCCGTTTCCAAGCTCGTGAAATTGACCGATGGTGGCGGGCTCCA
GCTTTGGGTGCAGCCTACCGGATCTCGCCTATGGCGCCTCGCCTATCGTTTTGGCGGCAAGCAGAAGCTTCTGGCGTTGG
GCAGCTATCCCCTCATCTCCCTCGCTGAGGCACGCGAGGCGCGCGATACCGCCAAACGTCTCCTCCTACGTGGCATCGAC
CCCGCACTGGAGCGTAAGTTGCAAAAGGCTTCGGCAGAGGACACCTTTCGATCAATCGCGGAGGATTATGTCGACAAGCT
GAAGAAGGAGGGACGTGCCGACCGGACCATCACCAAGGTCAAATGGTTGCTCGACTTTGCCTATCCAGCGTTTGGGGACA
AATGCGTTCGGGAGATCGATCCGGTTACAATTCTTGCCGCTCTCCGCAGCGTGGAGGATCGCGGTCGATACGAGTCGGCC
AGGCGACTGCGCTCCACGATTGGCAGCGTGTTTCGATATGCAATCGCAACCGCACGCGCCGATCTAGATCCGACGGTCGC
CCTCAGGGGCGCACTCGTCGGTCCGACGGTCACGCCGCGTGCCGCGGTTACCGATCCTATGGCCTTGGGAGGCTTGCTGA
GGGCGATCAATGCCTTTGACGGACAGCCTACAACCCGAGCCGCCCTGAAGCTGATGGCCCTGCTGTTTCCCCGCCCCGGC
GAGTTGCGTGCGGCCGGATGGGACGAGTTCGATTTCGAAAGCTCGGTGTGGAGCATCCCTGAAGGGCGCATGAAGATGAG
ACGGCCGCACCGCGTACCACTTTCCAGGCAGGCCGTCGGGGTCCTAACCTCACTTAGACGAATCTCTGGTGGTGGATCGC
TGTTGTTTCCTAGTGTTCGATCGGGCTTGCGTCCGATTTCCGACAACACGCTTAACGCGGCCCTTCGCCGTATGGGGTAC
GGCAAGGAAGAAGCTACCGCGCACGGTTTTCGAGCAACCGCATCAACTCTGCTGAACGAATGCGGAAAGTGGCATCCGGA
CGCCATAGAGCGGCAGTTGGCCCATGTTGAGAACAACGACGTTCGTCGCGCCTACGCCCGGGCAGAGCACTGGGAAGAGC
GCGTAAAGATGATGCAATGGTGGGCCGATTATCTGGAAGAACTTGCGAGCAAAAACGCGCGGGTGCAAATTGCCGGCGAT
CGGAGACCGCTAAAACTGGCCGACCTATGGTCTGGCGACCCATTGACCAGGGCGAAGAGTGATTGA

Protein sequence :
MALSDVKCRNARPVSKLVKLTDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLISLAEAREARDTAKRLLLRGID
PALERKLQKASAEDTFRSIAEDYVDKLKKEGRADRTITKVKWLLDFAYPAFGDKCVREIDPVTILAALRSVEDRGRYESA
RRLRSTIGSVFRYAIATARADLDPTVALRGALVGPTVTPRAAVTDPMALGGLLRAINAFDGQPTTRAALKLMALLFPRPG
ELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSRQAVGVLTSLRRISGGGSLLFPSVRSGLRPISDNTLNAALRRMGY
GKEEATAHGFRATASTLLNECGKWHPDAIERQLAHVENNDVRRAYARAEHWEERVKMMQWWADYLEELASKNARVQIAGD
RRPLKLADLWSGDPLTRAKSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-64 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-66 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-66 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-66 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-66 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-66 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-67 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 7e-66 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-66 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-66 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-66 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-65 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-63 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-64 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 9e-66 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 9e-66 41
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-65 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 9e-66 41
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-65 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-65 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 9e-64 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-65 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-65 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-65 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mesci_2349 YP_004141546.1 integrase family protein VFG0626 Protein 4e-67 42
Mesci_2349 YP_004141546.1 integrase family protein VFG1693 Protein 5e-66 42
Mesci_2349 YP_004141546.1 integrase family protein VFG1536 Protein 5e-64 41