Gene Information

Name : Mesci_1185 (Mesci_1185)
Accession : YP_004140399.1
Strain : Mesorhizobium ciceri WSM1271
Genome accession: NC_014923
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1243035 - 1244315 bp
Length : 1281 bp
Strand : +
Note : KEGG: rsh:Rsph17029_2136 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGCATTGACGGTTCTGTTCGGCACCTTCGTCTTTCTTCTGATCATCGGCACACCGATCGCCTTCTGCCTCGGTGTCGC
CAGCTTCGCCACGGTTCTGGTGCTGGGGCTGCCGCCGCTGGTGGTGTTCCAGCGCCTCAACTCCGGTGTCAGCGTGTTTT
CGCTGATGGCCATCCCGTTCTTCATCTTCGCCGGTGACCTGATGGTGCGCGGCGGCATTGCCGCTCGCCTTGTTGCGCTC
GCCGGGGCGTTGGTCGGCCACCTGAGAGGCGGGCTCGGCCAGGTCAACATCGCCGCCTCGACCATGTTCGGCGGCATTTC
CGGCTCGGCGGTGGCCGATGCCTCGGCGGTCGGCGGGCTGATGATCCCGCAGATGAAGGCGCGCGGCTACGGCGTCGATT
ATGCTGTCAACATCACTTCAGTCGGCGCCATCATTGCGCTGCTGATACCGCCTTCGCACAACATGATCATTTATTCGATT
TCGGCCGGCGGCCGGATCTCGATCGCCGATCTGTTCACCGCCGGCATCATACCGGGCCTGCTGCTGGCGCTATCTCTGAT
GGTCACGGCCTATTGGGTCGCCAGCCGCCGCGCCTATCCGACCGAGCCGTTCGCCGGCTTCGGCAGGGCGCTGCAATTGC
TCGTTGCCGCAATTCCCGGGCTGATCCTGATCGGCATCATCTTCGGCGGCGTTCGCTCCGGCGTCTTCACCGCCACCGAA
AGCTCCTGCATCGCCATCGTCTATGCTTTCCTGGTGACCCTGCTGATCTATCGCTCAATGAGCTGGAACGACTTCGTCAC
CGCGACCACCGCTGCCGTGCGCACAACCGCGATGGTGCTGATGATCATCGGCTGCGCCGCCGCCTTTGGCTGGCTGCTGG
CCTATCTCAGGGTGCCGGCCGCTCTGGTCGCCTTCCTGCAGTCGGTATCCGACAACAAGCTGGTCATCCTGCTGTTGATC
AACGTCGTGCTTCTCATCCTCGGCACGTTCATGGACATGTCGCCGCTGATCATCATCACCACGCCGATCTTCCTGCCGGT
GGTCATGGCCTACGGCGTCGATCCGGTGCATTTCGGCGTGATCCTCATTCTCAATCTCGGCATCGGCTTGTGCACACCGC
CGGTGGGGGCCGTGCTGTTCGTCAGCTGCGCGATCGGTCGGATCCCGATCTGGACGGCGATGCGTTCGATCTGGCCATTC
TATGGGGCGGCTTTCGCTGTGTTGATGCTTGTCACCTACGTGCCGGAAATTTCGTTGTGGTTGCCGCACCTGTTCCACTA
G

Protein sequence : 
MALTVLFGTFVFLLIIGTPIAFCLGVASFATVLVLGLPPLVVFQRLNSGVSVFSLMAIPFFIFAGDLMVRGGIAARLVAL
AGALVGHLRGGLGQVNIAASTMFGGISGSAVADASAVGGLMIPQMKARGYGVDYAVNITSVGAIIALLIPPSHNMIIYSI
SAGGRISIADLFTAGIIPGLLLALSLMVTAYWVASRRAYPTEPFAGFGRALQLLVAAIPGLILIGIIFGGVRSGVFTATE
SSCIAIVYAFLVTLLIYRSMSWNDFVTATTAAVRTTAMVLMIIGCAAAFGWLLAYLRVPAALVAFLQSVSDNKLVILLLI
NVVLLILGTFMDMSPLIIITTPIFLPVVMAYGVDPVHFGVILILNLGIGLCTPPVGAVLFVSCAIGRIPIWTAMRSIWPF
YGAAFAVLMLVTYVPEISLWLPHLFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-30 42
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-30 42
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mesci_1185 YP_004140399.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-30 42