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Name : hsdR3 (HIBPF06820) Accession : YP_004135181.1 Strain : Haemophilus influenzae F3031 Genome accession: NC_014920 Putative virulence/resistance : Unknown Product : type i restriction enzyme hindviip r protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 634079 - 637246 bp Length : 3168 bp Strand : - Note : - DNA sequence : ATGCTCAACGAAAACGACATCGAACAACTCACCCTGCAACGCCTGCAATCCCTCGGTTGGGAATATCGCTATGGTAAAGA CTTGCCTGTTCATGAGGGCGAGTTTGCCCGTGGCGATTTGAGCGGCGTAGTCTTTGTTGAGCAACTGCGTGAGGCGGTGC GTAAACTTAATCCTCAGCTGCCTGAAAGTGCGGTGGATTCTGTGGTGAAATCGGCGACGAAAAGCGATATTGGCGACTTG GTGGTACGCAATCAGGCGTTTTATAAACTGTTGCGTGATGGTGTGCGGGTAGAATATACGTTAAACGGTGAGCAAAAAAT CGAGATGGTGCGCTTGGTGGATTTCGAGCATTGGGGAAACAACCGTTTTGTCGCCGTCAATCAATTGGAAATCCGCAGCC GCAAAGGAGGTAAACGGATTCCCGATATTATCGGCTTTGTAAATGGCTTACCGTTGGTGGTATTTGAGCTCAAAAATCCG CTGCGTAAATCGGCGGATTTGTTGCAAGCGTTTAATCAGTTTGAAACCTATAAAGATGAAATTGCCGAGCTGTTTGTTTA TAACCAAGCCTTGATTATTTCAGACGGCATTGTCGCCCGTTTAGGCTCGCTTTCGGCAGATTTCCAACGCTTTACGCCGT GGAAAGTGGTCGATGAAAAAAATAAAAGCGCACGCTTATATTTTGACGATGAATTGCAAAGCCTGCTTAATGGCTTGCTA AAGCCTGAGGATTTATTGGACTATATCCGCTATTTCGTCTTGTTTGAATGGGATTCCGTTGGCAAAACCATTAAAAAAAT CGCAGCGTACCATCAATATTACGGCGTAAATGAAGCGGTAGATTCCACTATTTGGGCGACCTCAGAAAAAGGCGACCGCC GCATTGGCGTGATGTGGCATACGCAAGGTTCGGGTAAATCAATTTCCATGTTGTTTTATGCAGGCAAACTGCTTGCACAG CCTGAATTGAAAAATCCCACTATTGTGGTGGTCACCGACCGTAACGATTTGGACGGTCAGCTTTTCCAAACTTTTTCTTC AGGCAAGGATTTAATCAAACAAACACCGCAGCAAGTAGAAGACCGTGATCAACTGCGCCAACTGCTCGCGCAAAATGAAG TCGGCGGCGTGTTTTTTACTACGATTCAGAAATTCGCCCTAAATGAGGAAGAAAGCCGCTTCCCTATTTTAAATGAGCGC AACAATATTATTGTGATCAGCGATGAGGCTCACCGCAGCCAATATGGCTTTACGCAAAAGCTGCATAACGGCAAGTTTCA GACAGGCTACGCCCGCCATTTGCGTGATGCTTTACCTAATGCCTCGTTTATCGGTTTTACTGGTACGCCAATTAGCCTAG AAGATAAGGACACGCAAGATGTGTTCGGTCGTTATGTGTCCATTTATGACTTGCAAGATGCGGTGGAAGATGGAGCGACC GTGCCGATTATTTACGAAGCTCGCCAAATCAAGCTAGCGGAGAATGCTAATCACGATGAATTATTTGCAGAAATTGATGA ACTGCTGGAAGGCGAAGAAAACCCGAAATTACGCTTGCGAGAAAAATTGCTCGGCTCAGAAGCACGATTGCATGATTTAG CGGTCGATTTTGTGCAACATTTTGCCAAACGTAATGAAGTGGCGGACAGCAAAGCGATGATGGTGGTTTCCAGCCGTCAG ATTTGCGTGGACTTATACAATGAAATCATCAAACTGCGCCCTGAATGGCATTCGGACAATATCAACGAAGGGGCGATTAA AATTGTGATGACAGGTTCTGCTTCCGATGCGCCGGAAATGCAGAAACACGTTTACAGTAAACAGGAAAAACAAACGCTAG AACGCCGCTTTAAAGACCCGAACGATCCGCTGAAAGTGGTGATTGTGCGTGATATGTGGCTGACGGGATTTGATGCGCCT TGCTGTAATACGATGTATATCGACAAGCCGATGCAAGGGCATAACTTAATGCAGGCGATCGCCCGAGTAAACCGTGTATT CCGCAATAAAAGCCGAGAAAATGGCGGCTTGATTGTGGATTATGTAGGCATTGCTGACGAGCTCAAAGATGCCACCCAAC AATATACTAACTCGCAAGGCAAGGGAAAGCTGGCTGATAGCGTGATTGATGTATTCTTTAAAATGAAAGAGCATTTAGAA GTTATCCGCAGCCTGTTTGCAACGCCAGTTGAGGGGAAAACCTTTTATGTTCAGACGGTCTTAGAAAAAGATAATCCGAA TGAGCTTTTGATGGCGATTCGTTTTGCTGCCAACCATATTTTAAGCCTTGATCAATTACCGTTTGATGGCAAAGCGCACG AGCAGCATTGGTTTAATAAAAAAGAAACCGAACCACGCAAAAAAGCCTTTTTGAAAGCGGCAGGCTTGGTAAAAAAAGGC TATATGCTGTGCGGCGCATTGGCTGAAGTTGAGCCGTATAACCAAGAAATAGCCTTTTATGATGCCGTACGGGCAATTTT AACTAGACGTGAACAAAAAGGCACAGGCACAAATGAAAGACAGATTTTATTGAAAAAATTGGTCAATCAAACTGTGTATT CTGAAGGCGTGATTGATTTATTCGATCTGCTAGAAAAACCACAACCACAAATTAGCTTACTTTCCGAGGAATTTTTACAA ACTGTAAAAAATAGCCCGACTAAAAATTTATGGGTTACGGCAATGGAACGTTATTTAGCAAGCGAAATCAAAGCCAAATC AGGCGCGAACCTCACCTTGCAAAAAGACTTCGAGCAGCGCTTAAAAGAAGCCCTAAATCAATACCACAATCACAATTTGA CTGTGGTAGAGATTTTGGACGAACTCTTTAAAATGAGCCAAGATTTCCAAGAACGTCTAGCATTAGGGAAAAAACTAGGA TTAACCAAGGAAGAACTTGCCTTCTATGAAGCCCTATCTCAAAATCAAAGTGCAAAAGATTTGATGGGTGATGAAGTGCT TTCTAAACTGGCGAAAGAAATCACGGAAACACTTAGAAAATCAGTCACAATCGACTGGCAATACAAAGAGGCGGTACGAG CAAAAATGCGTATTCTCGTTAAACGCACCCTACAACGCTACAAATACCCTCCCGATAAACAGGAAGAAGCGGTAACTTAT GTGATTAAACAAGCTGAAGAAATTGCTGAGGATTTAACTGGTTTATAA Protein sequence : MLNENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKLNPQLPESAVDSVVKSATKSDIGDL VVRNQAFYKLLRDGVRVEYTLNGEQKIEMVRLVDFEHWGNNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNP LRKSADLLQAFNQFETYKDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVDEKNKSARLYFDDELQSLLNGLL KPEDLLDYIRYFVLFEWDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWHTQGSGKSISMLFYAGKLLAQ PELKNPTIVVVTDRNDLDGQLFQTFSSGKDLIKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNER NNIIVISDEAHRSQYGFTQKLHNGKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDAVEDGAT VPIIYEARQIKLAENANHDELFAEIDELLEGEENPKLRLREKLLGSEARLHDLAVDFVQHFAKRNEVADSKAMMVVSSRQ ICVDLYNEIIKLRPEWHSDNINEGAIKIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAP CCNTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGKGKLADSVIDVFFKMKEHLE VIRSLFATPVEGKTFYVQTVLEKDNPNELLMAIRFAANHILSLDQLPFDGKAHEQHWFNKKETEPRKKAFLKAAGLVKKG YMLCGALAEVEPYNQEIAFYDAVRAILTRREQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEFLQ TVKNSPTKNLWVTAMERYLASEIKAKSGANLTLQKDFEQRLKEALNQYHNHNLTVVEILDELFKMSQDFQERLALGKKLG LTKEELAFYEALSQNQSAKDLMGDEVLSKLAKEITETLRKSVTIDWQYKEAVRAKMRILVKRTLQRYKYPPDKQEEAVTY VIKQAEEIAEDLTGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
