Gene Information

Name : hfeC (HIBPF03080)
Accession : YP_004134883.1
Strain : Haemophilus influenzae F3031
Genome accession: NC_014920
Putative virulence/resistance : Virulence
Product : abc-type chelated iron transport system, permease component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 308029 - 308877 bp
Length : 849 bp
Strand : -
Note : -

DNA sequence :
ATGTTAGATTTATTGCTCGAACCTTTTTCCTATGATTATATGCTCAAGGCGATGATTTTGAGTACCGCAGTGGGTGGCAT
TTGTGCTTTTTTGTCTTCATATTTAATGCTTAAAGGCTGGTCTTTGATTGGCGATGCGCTTTCTCATTCCGTTGTGCCCG
GTGTTGCAATTGCCTATGCTTTTGCCTTGCCTTATGCACTTGGTGCATTTTTTGCAGGTATTTTTGCCGCACTCTCTATT
CTTTGGATTAAATCCATTTCTAAACTGAAAGAAGATGCCATTATCGGGTTTATTTTCAGTACTTTCTTTGCATTAGGTCT
ATTGCTCATTTCTTTAAATCCAACTGCAGTAAATGTGCAAAGTATTATTTTAGGCAATATTTTAGGTATTGCTGACGAAG
ATATTTACCAAGTGGCAATTATCATCGGCGTTTGTTTAGTATTGCTTTTACTGTTCTGGAAAGACTTATTACTGATCTTT
TTCGATGAAACACAAGCAAGAACGGTAGGGCTTTCGCCATTATTTTATAAAGTTTTGTTTTTTACTCTATTAAGTGCTTG
TGTAGTAGCTGCATTGCAAACTGTGGGTGCGATTTTAGTGATTGCGATGGTCATTACCCCGGGTGCGACGGCATATTTAC
TCACAGATAAATTCAAAACTTTATCAATCATTGCCATTATTTTAGGGGCGGTGACAAGTTTTGTTGGGGTCTATATTAGC
TATTATTTAGATGGTGCTACTGGCGGTGTGATTGTCACATTGCAAACATTATTATTCTTGGCAGCTTTCTTATTTTCACC
AAAATATGGTTTACTCACTCGCAATAAAAAGGCGGTAGAAAATGTTTGA

Protein sequence :
MLDLLLEPFSYDYMLKAMILSTAVGGICAFLSSYLMLKGWSLIGDALSHSVVPGVAIAYAFALPYALGAFFAGIFAALSI
LWIKSISKLKEDAIIGFIFSTFFALGLLLISLNPTAVNVQSIILGNILGIADEDIYQVAIIIGVCLVLLLLFWKDLLLIF
FDETQARTVGLSPLFYKVLFFTLLSACVVAALQTVGAILVIAMVITPGATAYLLTDKFKTLSIIAIILGAVTSFVGVYIS
YYLDGATGGVIVTLQTLLFLAAFLFSPKYGLLTRNKKAVENV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-62 63
sitC NP_461784.1 permease Virulence SPI-1 Protein 6e-62 63
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-62 63
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-62 63
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-62 63
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-32 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-32 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-32 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-32 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component BAC0441 Protein 1e-66 71
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component BAC0351 Protein 3e-62 63
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component BAC0352 Protein 4e-32 43
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component BAC0442 Protein 2e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component VFG0527 Protein 3e-62 63
hfeC YP_004134883.1 abc-type chelated iron transport system, permease component VFG0528 Protein 4e-32 43