Gene Information

Name : hfeD (HIBPF03070)
Accession : YP_004134882.1
Strain : Haemophilus influenzae F3031
Genome accession: NC_014920
Putative virulence/resistance : Virulence
Product : abc-type chelated iron transport system, permease component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 307221 - 308036 bp
Length : 816 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTGATTGGCTTTTAGAACCGCTACAATTTGAGTTTATGCAAAATGCATTATTGACCGCATTGATTGTTTCGATTAT
CTGTGCGTTACTTTCTTGTTATTTAGTCTTGAAAGGCTGGTCATTAATGGGCGATGCCATTTCTCACGCTGTATTACTCG
GTATTGTGCTTGCTTATTTGGCAGGAATCCCTTTAGCGATTGGCGCGTTTTTCTCAGGCATTTTTTGCTCCCTTGGCGTG
GGATATTTAAAAGAAAATAGCCGTATAAAAGAAGATACCGCAATGGGCATTGTATTTTCTGGAATGTTTGCTATTGGTCT
TGTTATATTCACCAAAATTCAAACAGAACAGCATTTAACCCATATTTTGTTTGGTAATGTGTTGGGCGTAAGTCATCAAG
AACTCATTCAAAGTGCGGTCATTTCTGCGATAATTTTTTGTCTGATTGTCTTTAAACGTAAAGACTTTTTGCTTTATTGT
TTTGACCCAAACCACGCCCGTGTTGCAGGGCTTTCTCCTAAAATTTTACATTATGGTTTGTTAATGCTGCTTGCTTTAAC
TATTGTAAGCACGATGCAAGTGGTTGGCGTTATTTTGGTGGTGGCAATGTTAATTGCACCAGGAATTACTGCACTTACGC
TAACAAAATCTTTTGATAAAATGTTATGGATTGCTATTATAAGTTCCATTACATCAAGCCTAATTGGCGTAATCTTGAGC
TATCATTTTGATGCCTCAACAGGTGCTTGTATTATTCTTCTGCAAGCCGCATTTTTTGTTATAGCATTAGCTTATAGCAA
GATTAGAATAAGATAA

Protein sequence : 
MFDWLLEPLQFEFMQNALLTALIVSIICALLSCYLVLKGWSLMGDAISHAVLLGIVLAYLAGIPLAIGAFFSGIFCSLGV
GYLKENSRIKEDTAMGIVFSGMFAIGLVIFTKIQTEQHLTHILFGNVLGVSHQELIQSAVISAIIFCLIVFKRKDFLLYC
FDPNHARVAGLSPKILHYGLLMLLALTIVSTMQVVGVILVVAMLIAPGITALTLTKSFDKMLWIAIISSITSSLIGVILS
YHFDASTGACIILLQAAFFVIALAYSKIRIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-63 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-63 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-63 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-63 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-63 54
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 4e-35 41
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeD YP_004134882.1 abc-type chelated iron transport system, permease component BAC0442 Protein 2e-76 62
hfeD YP_004134882.1 abc-type chelated iron transport system, permease component BAC0352 Protein 1e-63 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hfeD YP_004134882.1 abc-type chelated iron transport system, permease component VFG0528 Protein 1e-63 54