Gene Information

Name : GYMC52_3003 (GYMC52_3003)
Accession : YP_004133510.1
Strain : Geobacillus sp. Y412MC52
Genome accession: NC_014915
Putative virulence/resistance : Virulence
Product : transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3044138 - 3045118 bp
Length : 981 bp
Strand : -
Note : PFAM: transporter permease; KEGG: gyc:GYMC61_0552 transporter permease

DNA sequence : 
ATGCGTAAGCGTGATGTGGGACTTGTGGCTGGGTTGGCATTGCTTCTTGTCATCATCGTGCCGCTCGGCGCTTGTTTCGG
GGATGTGAAAATCCCTGTTTCGCAAGTATGGGAGGCATTTTTCAACCGAAAGTCTTCCCTGAATGGGGAAATCGTGTGGG
AATATCGCTTGCCAAGGATATTGGTCGGGCTGTTTGTCGGCGCCAACCTCGCCGTATCCGGAGCGCTGTTGCAAGCCGTG
ACGCAAAACCCGCTTGCCGCTCCGAATGTCATTGGCATGACGGCTGGCGCCAGCTTATTTGCTGTGCTGGCGCTGCTGAT
CATTCCGCATTTTCCTGTCAGCGGCCTGCCGTTCGTCACCTTTTTCGGGGCTCTCTTCGCCGGCCTTTGCGTGTATGCGT
TTGCTTGGAAGAAAGGAATGGATAAGGGCCGGTTTGCCCTATCGGGGATTGCTTTTGATGCCTTGTTTCAGGCCGTCATT
ACAGGGATTTTGGTTTTTGCGACCAAAGGAATTGATGCCGCGGTCATTTGGTTGGCGGGGAGTTTATGGGGACGGACATG
GGAACATGTTTTTCTCATCGCTCCTTGGTCAGTTGTTGGACTCGGACTCGCTTATCTTTGTTATCGCCGCATGAATGTCT
TGCAGCTGCACGATGATGTGGCCGCAAGCTTGGGAATGCGTGTTCAGGCGGCGCGTTTCCTGATCTTCCTCATCGCGGTC
GGCTTGTGTGGAAGCGCCGTAGCTGTATCGGGTCCGATCGGATTTTTGGGACTGGTCATCCCCCATCTTGCCCGTTTGTT
GACAAGGGCCGATTATCAGCTGCTCATTCCGGTCAGCGCCTTATTAGGAGCGATTTTGATGATCAGCGCGGATACGGCAG
GAAGAACCATCGCGGCGCCAATCGAAATTCCGGTCGGCATCTTAACGGCATTCATCGGTGCGCCGTATTTTCTCTTTCTG
CTTCGACGAGCAAAATTATAA

Protein sequence : 
MRKRDVGLVAGLALLLVIIVPLGACFGDVKIPVSQVWEAFFNRKSSLNGEIVWEYRLPRILVGLFVGANLAVSGALLQAV
TQNPLAAPNVIGMTAGASLFAVLALLIIPHFPVSGLPFVTFFGALFAGLCVYAFAWKKGMDKGRFALSGIAFDALFQAVI
TGILVFATKGIDAAVIWLAGSLWGRTWEHVFLIAPWSVVGLGLAYLCYRRMNVLQLHDDVAASLGMRVQAARFLIFLIAV
GLCGSAVAVSGPIGFLGLVIPHLARLLTRADYQLLIPVSALLGAILMISADTAGRTIAAPIEIPVGILTAFIGAPYFLFL
LRRAKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 3e-42 43
DIP0584 NP_938960.1 iron transport system membrane protein Virulence Not named Protein 5e-34 42
ciuC YP_003783390.1 iron ABC transporter permease Virulence PiCp 4 Protein 1e-29 41
ciuC YP_005685431.1 Iron ABC transporter permease Virulence PiCp 4 Protein 1e-29 41
ciuC YP_005681254.1 Iron ABC transporter permease Virulence PiCp 4 Protein 1e-29 41
ciuC YP_005683345.1 Iron ABC transporter permease Virulence PiCp 4 Protein 1e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC52_3003 YP_004133510.1 transporter permease BAC0163 Protein 2e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC52_3003 YP_004133510.1 transporter permease VFG1043 Protein 2e-42 43