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Name : GYMC52_2377 (GYMC52_2377) Accession : YP_004132907.1 Strain : Geobacillus sp. Y412MC52 Genome accession: NC_014915 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2441753 - 2444764 bp Length : 3012 bp Strand : - Note : TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; helicase; KEGG: gyc:GYMC61_0288 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicas DNA sequence : GTGTTTACAGAAGAGCAGCTAGAGCAAGCCGTCATTGAATATTTTCAAGAGCTCGGCTACCCATATATGCCAGCGAAGGA GTTAAAGCGAGATAAAAAGGACGTTTTATTGCTTGACCGTTTGGAAGAAGCGTTAGTGAAATTGAATCCAGAAGTGCCTG TTGAGATCATTCGCGAGGTGATGCGCAAAATCCACTATTTTGAAACGAATGACGTGCTTACAAACAACAAAATGTTTCAT AAGTACTTAACAGAAGCGGTAGTAGTGCCTGAGCTTGTGAATGGAGAGACGGTTTACCATCATGTTCGACTCATCGATTG GGAAACGCCAGAAAACAACGATTTTCTCGTTGTCAACCAATTGGAAGTCATTGAAAAAGGACAGGAGAAAATTCCAGACA TCGTGCTGTATGTCAACGGTCTTCCGCTTGTTATTGCAGAGTTAAAAAGCACGTCACGCGAAGAAGTCGATATTGAAGAT GCATACAAGCAGCTAAAAAATTATATGAACGTCCACATCCCTTCATTGTTCTACTACAATGCGTTTCTTGTCATTAGTGA CGGGGTTCAGGCGCGCGCGGGAACGATCACCGCGCCGCTTGACCGGTTTATGGCTTGGAAAAAGATCAATATCGAAGATG ATGTCATAGAAAACCGGGAGTTAGAAACGTTAATATTCGGCTTGTTCGAGCCAAAACGCTTTTTGGATGTCATCAAAAAC TTTACGCTATTTGCAAACGAAGCAAAAATAATGGCGGCGTATCACCAATATTACGGCATGAAGAAAGCAGTGGCTTCTAC GATCCAAGCCATTCATACAGATAAACGTGCAGGAGTCATTTGGCATACGCAAGGAAGTGGCAAAAGTTATTCGATGGTGT TTCTTGCGGGGAACTTAGTCAGACAGGAACAGCTGAAAAATCCAACCATTGTCGTGATCACCGATCGCAACGATTTAGAC GGACAGTTATTTGAAACGTTTTGCGGGGCGAGTGAATTTTTACGGCAAACACCATTACAAGCGGAAACGCGCAGCCATTT GAAAGAGTTGTTGGAACATCGGCAAACGGGCGGCATCGTTTTTTCAACGATTCAAAAGTTTGAAGAAGAAACCGGCTTGC TTTCTGAACGGGAAAACATCATCGTGATGGTTGACGAAGCCCACCGCTCCCAATACGGCGTTGATCCGAAATACGATATC GAAACGGGGGAGCAAAAGTACGGGTATGCGAAATATTTGCGTGAAGCTTTGCCGAATGCGACGTATATCGCATTTACAGG GACGCCGATTGAAACGACCGATCGATCGACGACCGGCTTGTTCGGCGATGTCATTGATGTGTATGATATGACCCAAGCGG TGGAAGACGGGGCGACGGTCAAAATTTATTACGAATCTCGCTTGGCGAAAGTGAAATTGGACGAGAAGAAAATGAATGAA ATTGACCAAGAATATTGGCGCATGCAAGTTCACGAAGGCGTCGGCGACTATATTATTGAACAAAGCCAAAAAAGCTTGAG CCGCATGGAGCAAATCATAGGCGACCAAGACCGAATTCGCGAAGTCGTCACGGACATTATCCACCATTACGAGGAGCGCG AACATCTTGTCAAAGGAAAAGCGATGATCATTGCTTATTCGCGCAACACCGCGTTTGCAATGTATAAAGAGATCATGCGT CAACGTCCGGACTGGAAAGACAAAGTGAAAATTGTCATGACCGAAAACAATCAGGATCCGGAGGAGCTCGCGAAGCTTGT CGGAAATAAACAAACGCGGAAACAGCGGGAAAAAGAATTTAAAGATGTCGATCATCCGTTTAAAATCGTCATTGTTGTTG ATATGTGGCTCACCGGTTTTGACGTGCCGGCGCTCGATACAATGTATATTGACAAGCCCATGAAGGCGCATAACTTGATG CAAGCGATCGCCCGCGTCAACCGCGTTTATCCGGGGAAAACAGGCGGATTGATTGTTGATTACATCGGCTTAAAGAAAAA TTTAATGGAAGCGTTGCAAACGTATACGAAGCGCGACCAAGATAAAGTGCAAGAAAATACCCAAGCCCGCGACATCGCGT TAAACATCCTCGAAGTGTTGCGCAATATGTTCCATTCGTTTGATTATCGCGCCTTTTTCGGTGATAGCGACAAAAAGCGT TATGAAGTCATTCGCGACGGAGCAGAATTTGTGCAGCAAACGGAAAAAAGAAAATTGCTGTTTATGACGGAAACGAAAAA GCTGAAAGATGTTTATAAAATTTGCACCGGCTTGCTTTCGAAAGAACAAAAAGAGGAAATTTCCTATTTTATCGCTGTTC GTTCCTTTATTATGAAATCTTCGCGAACAGGCACACCTGACTTAAAAGAAGTGAATGAACGAATCGCGAAAATGTTGGAA GAAGCGATTTTGGAAGATGAAGTGATGGTGTTGACCCAAGCGGTTTCATCGGAAAGTTTTGATTTGTTGAATGAGGAGAA CATCAAAAAATTACGCGCCTTGCCGCAAAAAAATATTGCGTCGACCATTTTAATGCGCGTATTAAAGCAAAAATTGCAAG ATGTGAAAAAGACAAACATGACGGTGAGCCAAACATTTTCCAAACGTTTTGAAAAAATATTAGAAAAATACAACAATCGA AATGATTACACGGATGTGTATGAAGTATTTGAGGAATTGCTTAAATTTAAAGAAGAGTTGCAGGCGGCGATTGAAGAAGG GAAACAGCTTGGCTTAACCGAGGAGGAGAAGGCGTTTTTCGACGTGTTAGGTTCTGACCCGGATATAAAAAAATTAATGG AAGATGAGGTATTAATTCAAATCGCAAAGGATTTGGCGAAAACGGTAAAGGAAAACCGGACGCACGATTGGGATAAAAAA GCGCAAGCCCAAGCGCGCATGCGCCTTGAAATTAAGAAGGTGCTGCGCAAGTACGATTATCCGCCAAATAAACAGCCGAA AGCGGTGGAAGATGTGCTTGAGCAGGCGAAGCTGCAGTGCATGAATATGTAA Protein sequence : MFTEEQLEQAVIEYFQELGYPYMPAKELKRDKKDVLLLDRLEEALVKLNPEVPVEIIREVMRKIHYFETNDVLTNNKMFH KYLTEAVVVPELVNGETVYHHVRLIDWETPENNDFLVVNQLEVIEKGQEKIPDIVLYVNGLPLVIAELKSTSREEVDIED AYKQLKNYMNVHIPSLFYYNAFLVISDGVQARAGTITAPLDRFMAWKKINIEDDVIENRELETLIFGLFEPKRFLDVIKN FTLFANEAKIMAAYHQYYGMKKAVASTIQAIHTDKRAGVIWHTQGSGKSYSMVFLAGNLVRQEQLKNPTIVVITDRNDLD GQLFETFCGASEFLRQTPLQAETRSHLKELLEHRQTGGIVFSTIQKFEEETGLLSERENIIVMVDEAHRSQYGVDPKYDI ETGEQKYGYAKYLREALPNATYIAFTGTPIETTDRSTTGLFGDVIDVYDMTQAVEDGATVKIYYESRLAKVKLDEKKMNE IDQEYWRMQVHEGVGDYIIEQSQKSLSRMEQIIGDQDRIREVVTDIIHHYEEREHLVKGKAMIIAYSRNTAFAMYKEIMR QRPDWKDKVKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVDHPFKIVIVVDMWLTGFDVPALDTMYIDKPMKAHNLM QAIARVNRVYPGKTGGLIVDYIGLKKNLMEALQTYTKRDQDKVQENTQARDIALNILEVLRNMFHSFDYRAFFGDSDKKR YEVIRDGAEFVQQTEKRKLLFMTETKKLKDVYKICTGLLSKEQKEEISYFIAVRSFIMKSSRTGTPDLKEVNERIAKMLE EAILEDEVMVLTQAVSSESFDLLNEENIKKLRALPQKNIASTILMRVLKQKLQDVKKTNMTVSQTFSKRFEKILEKYNNR NDYTDVYEVFEELLKFKEELQAAIEEGKQLGLTEEEKAFFDVLGSDPDIKKLMEDEVLIQIAKDLAKTVKENRTHDWDKK AQAQARMRLEIKKVLRKYDYPPNKQPKAVEDVLEQAKLQCMNM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
