Gene Information

Name : GYMC52_0172 (GYMC52_0172)
Accession : YP_004130830.1
Strain : Geobacillus sp. Y412MC52
Genome accession: NC_014915
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 186884 - 187675 bp
Length : 792 bp
Strand : -
Note : KEGG: gyc:GYMC61_1050 ABC transporter protein; PFAM: ABC transporter; SMART: ATPase AAA

DNA sequence : 
ATGGCCCGCCTATATGCTAAAGAATTGACCGTCCGCTACGATGACCGGACGATTTTCGAACGTTTGTCCGTCCGCATTCC
AGACCGGCAAATCACCGCCATTATCGGGCCGAACGGATGCGGAAAATCGACGCTGCTCAAGACGTTGACGCGCATCATTT
CCCCGCAGTCCGGCGCGGTTATTTTAGATGGCCAAGCGATTTCCCAGCAGCCGACAAAAGAATTGGCGAAAAAAATGGCC
ATTTTGCCGCAAATGCCGGAAGCGACAAGCGGCCTGACCGTCGGCGAACTCGTCTCCTACGGCCGCTTTCCGTATCAGAA
AGGATTCGGGCGGCTGACGAAGCGGGATTATGAAGCGATTGACTGGGCGCTTGACGTCACCAAAACGGCCGATTTGAAAC
ACCGGCCGGTCGATGCGCTCTCCGGCGGGCAGCGGCAGCGCGTCTGGATCGCCATGGCGCTCGCCCAGGAGACCGACATC
ATCTTTTTAGACGAGCCGACGACGTATTTGGACATCGCCCACCAGCTCGAGGTGCTGGAGCTCCTTGAACGCCTGAACAA
AGAAGAGAAGCGGACGATCGTCATGGTACTCCACGATATCAACCAAGCGGCGCGGTTCGCCGATTATATGATCGCCATGA
AAGCAGGGGCGATCGTCAAGGCCGGGCCGAGCGAAGAGGTCGTCTGCCGCGGCGTGCTCCGCGATGTGTTTGGCATCGAC
GCCGACATCGGCCGCGATCCGCGGACGAACAAACCGATTTGCTTCACTTATCAACTGCTTAGGGAGGCTTGA

Protein sequence : 
MARLYAKELTVRYDDRTIFERLSVRIPDRQITAIIGPNGCGKSTLLKTLTRIISPQSGAVILDGQAISQQPTKELAKKMA
ILPQMPEATSGLTVGELVSYGRFPYQKGFGRLTKRDYEAIDWALDVTKTADLKHRPVDALSGGQRQRVWIAMALAQETDI
IFLDEPTTYLDIAHQLEVLELLERLNKEEKRTIVMVLHDINQAARFADYMIAMKAGAIVKAGPSEEVVCRGVLRDVFGID
ADIGRDPRTNKPICFTYQLLREA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-56 51
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-56 51
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-52 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-47 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-47 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-47 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-47 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-48 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-45 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC52_0172 YP_004130830.1 ABC transporter BAC0164 Protein 4e-48 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC52_0172 YP_004130830.1 ABC transporter VFG0925 Protein 6e-47 48
GYMC52_0172 YP_004130830.1 ABC transporter VFG1042 Protein 3e-48 44