Gene Information

Name : GYMC52_1141 (GYMC52_1141)
Accession : YP_004131750.1
Strain : Geobacillus sp. Y412MC52
Genome accession: NC_014915
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1167923 - 1168591 bp
Length : 669 bp
Strand : +
Note : KEGG: gct:GC56T3_2319 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGAGTGAATTTGTCCATATGTTTGATTCGATGGCTCCCGAGCACGTGTCGACAGCGGTGAAGCTTCTTCTGCTGCTCAC
CGTGTTGTCGATCGCACCCGGCATTCTCATTATGATGACATGTTTTACCCGCATCGTCATCGTTTTGTCGTTTGTGCGCA
CGGCGCTCGGCACGCAGCAGATGCCGCCGAACCAAGTGCTCGTCGGGCTCGCCTTGTTTTTAACGTTTTTCATTATGGCG
CCGACTTGGAAAGACATCAACGATCAGGCATTGCAGCCGCTGTTTGCCGACAAAATTGACTTGGAGGAGGCGTATGAACG
GGCGGCTGTTCCGCTGAAGCAGTTTATGAGCCAATACACAAGGCAGGAAGATTTGGCGCTGTTTTTATCATACAGCGGCG
CCAAACAGCCGAAAACGATCAACGACATCCCGATGACCGCGCTCGTGCCGGCGTTTGCCATCAGTGAGTTGAAAACGGCG
TTTCAAATGGGCTTTATGATTTTTATTCCGTTTTTAGTCATCGACATGATCGTCGCCAGCGTCTTAATGTCGATGGGGAT
GATGATGCTGCCGCCAGTGATGATTTCGCTGCCGTTTAAAATTTTATTGTTTGTCCTTGTTGATGGCTGGCATTTGGTCG
TCAAATCATTGTTGCAAAGTTTTCAATAA

Protein sequence : 
MSEFVHMFDSMAPEHVSTAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIMA
PTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKTINDIPMTALVPAFAISELKTA
FQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWHLVVKSLLQSFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-22 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-22 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-22 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-16 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC52_1141 YP_004131750.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-45 56
GYMC52_1141 YP_004131750.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-45 56
GYMC52_1141 YP_004131750.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-42 55
GYMC52_1141 YP_004131750.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-44 54