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Name : Alide_4426 (Alide_4426) Accession : YP_004129009.1 Strain : Genome accession: NC_014911 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 5266 - 7329 bp Length : 2064 bp Strand : - Note : SMART: DNA topoisomerase I DNA-binding; Toprim sub domain-containing protein; DNA topoisomerase I ATP-binding; TIGRFAM: DNA topoisomerase III; KEGG: bam:Bamb_6614 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain DNA sequence : ATGCGCCTTTTCATCGCAGAAAAGCCGTCCGTCGCCAAGGCCATCGCCGGCGAGCTGGGCGCGACCGGCAAGGGCGACGG CTTCATCGAGTGCGGCACCGACAAAGTGACCTGGTGCTTCGGGCACATGCTCGAACAGGCCGACCCCGACGAGTACACGC CCGATGACGTGCCGCGCGGCCAGTCCGGCAAGAAGGTCTGGCGCGTCGATGAGCTGCCCATCATCCCCGAGAGCTGGATT CTCAAGCCCAAGGACGACGCGAAGAAGCAGCTCGCCGTGATCGGCAAGCTGCTCAAGGAGGCCAAGGAGATCGTCAACGC CGGCGACCCCGACCGCGAAGGCCAGTTGCTGGTTGACGAAGTGCTGGAGCACTTCCGCAACAGCAAGCCGGTGCGCCGCT TTTGGGTGAGCGCGCAGGACTCCGTTTCCGTCAAGCGCGGCCTGGCCGCGTTGAAGGAGAACACCACCTATGCAGGCTGG GCCGACGCTGCACGCGGGCGGCAGCGCGCCGACTGGCTGATCGGCATGAACCTCAGCCGCGCGTACACGCTGCGCGCGCA GCGCGGCGGCTCGCGCGCCCTGCTGACCGTGGGCCGCGTGCAGACGCCGACGCTGGCCCTCGTGGTCGCCCGCGACCGCG AGATCGAGGCATTCAAGGCCGTGCCGTACCACACCATCCGGGCGGTGGTGCAGCACGCCGGCGGCAGCTTCGCCGCCGCA TGGAAGGCGAAGGAGGATCAAGCCGGTCTGGACAGCGAAGGCCGCCTTGTCGATACCGCCGTCGCCGACGCCCTGGTGGC CGCCGTCAAGGGCCAGCCGGGCACCATCGCCGCGTACAAACAGGAGGCCAAGAAGCAGAACCAGCCGCTGGCCTTCGCCC TGTCCGACATTACGGCACTGGCCTCGGCCAAGTTCGGCTACAGCGCCGAGGACGTGCTGAACACCTGCCAAGCGCTCTAC GAGACGCACAAGCTGACCTCGTACCCGCGCACCGACTGCGCCTACCTGCCGGAGTCGCAGCACGCCGACGCGCCGCGCGT GCTGGAGGCGATCAAGCACGTCAACCCCGAACTGGCCGGCCTGGTCGATGGTGCCGATCCGCGTATCAAGTCCAAGACGT GGGACGACTCGAAGATCACCGCGCACCACGGCATCGTGCCGACCATGCAGAAGGGCAGCAAGGCCGCCCTCAGCGAGCGC GAGCGCAACATCTACGACCTGATCGTGCGCGCCTACCTGGCGCAGTTCTACCCGCTGCACGAGTACATGCAGACCACCGT GGGCGTCGAGATCGCGGGCGAGAACTTCGCCGCGAGCGGCAAGGTAGTCACGCGCAACGGCTGGCGTGACGTGTACAGCC AGGCCGACGAGGAAGGCGAGAAGGACGAGGACGACGACAGCGGCACGCAGGCCCTGCCGTCGATGGCCCAGGGCGACGCC GTGACCTGCACGGACGCCACCCGCAAGGACGCCAAGACGAAGCCGCCAGCGCGCTTTACCGAGGGCACGCTGATCCGCGC GATGGAGAACATCCACAAGTTCGTCAGCGATGCCGAGCACAAGAAGATGCTGCGCGAGGGCGACGGCATCGGCACGTCGG CCACCCGTGCGTCGATCATTTCCGAGTTGAAGCGGCGCGAGTTCCTGGCCGTCAAAGGCAAGCAGATCATCAGCACGACC CTCGGCCGCAGCGTCATCGACGCGCTGCCCGAGGTTGTGAAAAGCCCGGTGCTGACCGCGCTCTACGAGCGGATGCTGAA AGGCGTCGAGCAGGGCACGGCCGCCCTGGACGCCTTCATCACGAAGCAAGAGACGTTCATCCGCGACCAGGTGGCGAAGG CCAACAGCGGAGCCGTGACCATCGCCGGCGGCAAGGAAGCCGCGCCGGTGTCATCCCTTCACAAGTGCATGGCCTGCGGC AGCGGCTTGTCGCGCCGGCCGAGCAAGAAGAAGGGGCAATTCTGGTGGGGTTGCAGCAACTTCCCCACATGCAAGCAGAC CTACCCCGACCTCAAGGGTCGGCCCGACTACAGCAAGGGCCGCAACGGCCCGGCATCCGAATGA Protein sequence : MRLFIAEKPSVAKAIAGELGATGKGDGFIECGTDKVTWCFGHMLEQADPDEYTPDDVPRGQSGKKVWRVDELPIIPESWI LKPKDDAKKQLAVIGKLLKEAKEIVNAGDPDREGQLLVDEVLEHFRNSKPVRRFWVSAQDSVSVKRGLAALKENTTYAGW ADAARGRQRADWLIGMNLSRAYTLRAQRGGSRALLTVGRVQTPTLALVVARDREIEAFKAVPYHTIRAVVQHAGGSFAAA WKAKEDQAGLDSEGRLVDTAVADALVAAVKGQPGTIAAYKQEAKKQNQPLAFALSDITALASAKFGYSAEDVLNTCQALY ETHKLTSYPRTDCAYLPESQHADAPRVLEAIKHVNPELAGLVDGADPRIKSKTWDDSKITAHHGIVPTMQKGSKAALSER ERNIYDLIVRAYLAQFYPLHEYMQTTVGVEIAGENFAASGKVVTRNGWRDVYSQADEEGEKDEDDDSGTQALPSMAQGDA VTCTDATRKDAKTKPPARFTEGTLIRAMENIHKFVSDAEHKKMLREGDGIGTSATRASIISELKRREFLAVKGKQIISTT LGRSVIDALPEVVKSPVLTALYERMLKGVEQGTAALDAFITKQETFIRDQVAKANSGAVTIAGGKEAAPVSSLHKCMACG SGLSRRPSKKKGQFWWGCSNFPTCKQTYPDLKGRPDYSKGRNGPASE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 5e-119 | 43 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-119 | 43 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 5e-119 | 43 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 7e-107 | 41 |
