Gene Information

Name : Alide_0759 (Alide_0759)
Accession : YP_004125412.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 800258 - 801334 bp
Length : 1077 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; KEGG: abo:ABO_0909 4-epimerase

DNA sequence : 
ATGTCATCCCGCTATCAAACCGTACAAAGCCAACTGCAAGCTACGCCAAAAACATGGCTCATCACTGGCGTGGCTGGCTT
CATAGGCAGCAACCTGTTGGAAACCCTGCTCAAGCTGGGTCAACGCGTGGTGGGCCTGGACAACTTCGCCACCGGCCACC
AGCACAACCTGGATGAAGTACAAACCTTGGTCAATGGAGCGCAGTGGGCCAACTTCCACTTCATTCAAGGCGATATTCGT
ATATTGGACGACTGCCGCCGCGCCATGACATTTCTCCCTCTGGGAGAGGGGCGGGACGGGGGGCAGCCCGGGCCCATCCC
TGTCGATTACGTACTGCATCAGGCGGCACTGGGTAGCGTACCTCGCAGCATCGAGGACCCTATCACCACCAATAGTGCCA
ATATCACCGGTTTTTTAAATATGCTGGTGGCCGCGCGGGACGCCAGGGTACAAAGCTTCACCTACGCAGCCAGCAGCAGC
ACCTATGGAGATCACCCCGGCCTGCCCAAGGTCGAAGAGGTGATCGGCAAACCCCTTTCCCCCTACGCCGTCACCAAGTA
CGTCAATGAACTTTATGCAGACGTCTTTGCCCGCACCTACGGCTTTAACGCCATAGGGCTACGCTACTTCAATGTGTTTG
GCCCGCGTCAGGATCCGGATGGTGCTTACGCCGCAGTCATCCCCAAATGGGCGGCAGCCATGATCCAGGGCAAGGATGTA
TTTATCAACGGCGACGGAGAAACCAGCCGTGATTTTTGTTTTATCGAAAATTCCGTCCAGGCCAACCTGTTGGCGGCCAC
TAGCGCAGATCCTGCTGCACTTAACGAAGTCTATAACGTGGCGGTCTCCGGTCGCACCACACTCAATACCTTATTTGACG
AGCTGAAGCTTGCACTGGCTGGCAATGGCATTTCTTATGTCAAGGCCCCCGTCTATCGGGATTTTCGTGCCGGTGATGTG
CGCCATAGTCAAGCCGATATAGGTAAAGCCAAGAAACTCTTGGGTTATATGCCTAGTCATGAGATTAAGGAAGGTATTTC
CCAGTCGATACCTTGGTATATTCGTTTCTTGGGCTAA

Protein sequence : 
MSSRYQTVQSQLQATPKTWLITGVAGFIGSNLLETLLKLGQRVVGLDNFATGHQHNLDEVQTLVNGAQWANFHFIQGDIR
ILDDCRRAMTFLPLGEGRDGGQPGPIPVDYVLHQAALGSVPRSIEDPITTNSANITGFLNMLVAARDARVQSFTYAASSS
TYGDHPGLPKVEEVIGKPLSPYAVTKYVNELYADVFARTYGFNAIGLRYFNVFGPRQDPDGAYAAVIPKWAAAMIQGKDV
FINGDGETSRDFCFIENSVQANLLAATSADPAALNEVYNVAVSGRTTLNTLFDELKLALAGNGISYVKAPVYRDFRAGDV
RHSQADIGKAKKLLGYMPSHEIKEGISQSIPWYIRFLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 3e-103 63
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 3e-103 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_0759 YP_004125412.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 1e-103 63