Gene Information

Name : Alide_4213 (Alide_4213)
Accession : YP_004128802.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4405461 - 4406135 bp
Length : 675 bp
Strand : -
Note : KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGCGCATCCTCATCGCCGAAGACGACCAGGTGCTGGCCGACGGCCTGCTGCGCACGCTGCGCGGCTCCGGCGCCGTCGT
GGACCATGTGGCCAGCGGCAGCGAGGCCGATGCCGCGCTGCTCACCAACAACGAGTTCGACCTGCTGATCCTGGACCTGG
GTCTGCCCCGGCTGCACGGGCTGGAGGTCCTCAAGCGCCTGCGCGGGCGCGGCTCGGCCCTGCCGGTGCTCATCCTCACC
GCGGCCGACGGCATCGAGGAGCGCGTCAAGGGCCTGGACCTGGGGGCCGACGACTACATGGCCAAGCCCTTCGCCCTGTC
CGAGCTGGAGGCGCGCGTGCGCGCGCTCACGCGCCGCGGCATGGGCGGCACCAGCGCCACCATCAAGCACGGCCCGCTGG
TGTACGACCAGGCCGGCCGCGTGGCCACCATAGACGGCAAGATGGTGGAGCTGTCCGCGCGCGAGCTGGGCCTGCTGGAG
GTGCTGCTGCAGCGCGCCGGCCGCCTGGTGAGCAAGGAGCAGCTCGTCGAGCGCCTGTGCGAATGGGGCGAGGAGGTGAG
CAACAACGCCATCGAGGTCTACATCCACCGCCTGCGCAAGAAGATAGAGCGTGGCCCGATACGCATCGCCACCGTGCGCG
GCCTGGGCTACTGCCTCGAAAAGATTCCCGGTTAA

Protein sequence : 
MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRLHGLEVLKRLRGRGSALPVLILT
AADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGGTSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLE
VLLQRAGRLVSKEQLVERLCEWGEEVSNNAIEVYIHRLRKKIERGPIRIATVRGLGYCLEKIPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-32 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_4213 YP_004128802.1 response regulator receiver BAC0487 Protein 6e-30 46
Alide_4213 YP_004128802.1 response regulator receiver BAC0083 Protein 6e-30 46
Alide_4213 YP_004128802.1 response regulator receiver BAC0638 Protein 1e-21 44
Alide_4213 YP_004128802.1 response regulator receiver BAC0347 Protein 4e-27 42
Alide_4213 YP_004128802.1 response regulator receiver BAC0197 Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_4213 YP_004128802.1 response regulator receiver VFG0473 Protein 2e-31 43
Alide_4213 YP_004128802.1 response regulator receiver VFG1390 Protein 3e-26 42