Gene Information

Name : Alide_4038 (Alide_4038)
Accession : YP_004128631.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Unknown
Product : relaxase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4208814 - 4210676 bp
Length : 1863 bp
Strand : +
Note : PFAM: Relaxase; protein of unknown function DUF1528; KEGG: har:HEAR2031 hypothetical protein

DNA sequence :
ATGCTCTCCCTGTTCCAGCGAAAACGGCCCCCGGTCGCCGGCGCGCCACCGCCAGCACCCGCCACCGTCCTCCCGAAAGG
GTTGATGCGGCCCGAGTCGGCCGCATCGCTGCTGGCCACCCCGCGCCGGCAGAAGCTGCTGGAGCACATTTGGCAGCGCA
CCTCGCTGTCGCGCAGGCAATTCGCCACGCTGTACCGAGCGCCCCTGGAACGCTACGCCGAGCTGGTCCAGGCCTTCCCG
GCCTCCGAGGCGCATCACCATGCCTATCTGGGCGGCATGCTCGACCACGGCCTCGAAATCGTCGCCTACAGTCTGAAACT
GCGGCAGTCCCATCTGCTGCCCATCGGCGCCAGCCCCGAAGACCAAGCGGCACAGTCCGAAGCCTGGACCGCCGCCGTCG
CCTACGCCGCGCTGCTGCACGACATCGGCAAGATCGCCGTCGATCTGCACGTCGAGCTGGCCGACGGCAGCATCTGGCAC
CCTTGGCACGGCCCGCTGCGCCAGCCATACCGATTCCGCTACCGCGACGATCGCGAGTACCGCCTGCACAGCGCCGCGAC
AGGTTTGCTCTACCACCAACTGCTCGACCGTGAGGCCCTGGACTGGCTCAGCGGCTATCCGTCCCTGTGGGCACCACTGC
TCTACGTCCTGGCCGGGCAGTACGAGCACGCCGGCGTACTGGGCGAACTTGTCGTGCAGGCAGACCGGGCCTCGGTGGCC
CAGGAGCTGGGCGGCGATCCGGCCCGCGCCATGGCTGCGCCCAAGCACGCGCTGCAGCGCAAGCTGCTCGACGGGTTGCG
CTACCTGCTCAAGGAACAGTTGAAACTGAACCAGCCGGAAGCCTCCGATGGCTGGCTCACCGACGATGCCCTGTGGCTGG
TGAGCAAAACGGTCTCGGACAAACTGCGTGCGCACCTGCTGTCCCAAGGCGTCGATGGCATCCCTGCGAACAACACCGCG
GTGTTCAACGTCCTCCAGGATCACGGCATGTTGCAGCCGGCGCCCGACGGCAAGGCTATTTGGCGCGCGACCATAACCAG
TTCCACCGGCTGGTCCCACTCGTTCACCCTGTTGCGCCTCGCTCCTGCGCTGATCTGGGAATCTGGCGAGCGACCGACGC
CTTTTGCAGGCACGGTAGCGATCGACGCGGCAGTCGCCGAAAACGACGCCGAGGCGCCGAAAATGCCGCCTGCGGCCATG
GCGAAGGCAGCCCCGAACGGTCAGAAACTTCCATCTTGGGAAGGCAGTAGTACCGTCACCGCCTCACCGCCTAAGGCCCA
GCCCGTGTCCGATGTCATGGAGGACATGCTGGCAATGGTGAGCACGAGCGGCTCGCCTGGTGCCGAGCAGGATGTGGAGC
CGGTTGCACAGAGAAGCTACCCCGCAGACCCCAGCACTCCTATGCCAGCGACTGCCGCAGTGCTTCCTTCGCCACCACCA
TCTACTGCTAAACCACCCCTAACAGCAGCGCCCCCGTCAGGCGAACATTTCATGATGTGGCTGAAACAGGGAATTGCTTC
GCGCCGGCTCATCATCAACGACGCAAAAGCGCTCGTGCATTCCGTGAATGACACGGCCTACTTGGTCAGCCCAGGTGTGT
TCCAGCGCTACGTCCAGGAGCACCCTCATGTCGGCACGCTGGCACGGCAGGACAAGATGCCGGATTGGCAGTGGGTGCAG
AAGCGCTTTGAGAAACTGGGGTTGCATCGAAAGCACGACAGCGGCTTGAACATCTGGATCTGTGAAGTCACCGGGCCGCG
CAAGTCCCGGAAGCTGCATGGGTATTTGCTGATCGATGCGAATTGGTTGTTCGATGCAGTACCACCCAACAATCCTTATC
TCAGAGTTACGCAAGAGATTTGA

Protein sequence :
MLSLFQRKRPPVAGAPPPAPATVLPKGLMRPESAASLLATPRRQKLLEHIWQRTSLSRRQFATLYRAPLERYAELVQAFP
ASEAHHHAYLGGMLDHGLEIVAYSLKLRQSHLLPIGASPEDQAAQSEAWTAAVAYAALLHDIGKIAVDLHVELADGSIWH
PWHGPLRQPYRFRYRDDREYRLHSAATGLLYHQLLDREALDWLSGYPSLWAPLLYVLAGQYEHAGVLGELVVQADRASVA
QELGGDPARAMAAPKHALQRKLLDGLRYLLKEQLKLNQPEASDGWLTDDALWLVSKTVSDKLRAHLLSQGVDGIPANNTA
VFNVLQDHGMLQPAPDGKAIWRATITSSTGWSHSFTLLRLAPALIWESGERPTPFAGTVAIDAAVAENDAEAPKMPPAAM
AKAAPNGQKLPSWEGSSTVTASPPKAQPVSDVMEDMLAMVSTSGSPGAEQDVEPVAQRSYPADPSTPMPATAAVLPSPPP
STAKPPLTAAPPSGEHFMMWLKQGIASRRLIINDAKALVHSVNDTAYLVSPGVFQRYVQEHPHVGTLARQDKMPDWQWVQ
KRFEKLGLHRKHDSGLNIWICEVTGPRKSRKLHGYLLIDANWLFDAVPPNNPYLRVTQEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C36 AAN62129.1 conserved hypothetical protein Not tested PAGI-2(C) Protein 0.0 77
ORF SG44 AAN62266.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 0.0 68
unnamed ABR13343.1 hypothetical protein Not tested PAGI-5 Protein 3e-141 51
RL003 AAP84130.1 pathogenesis-related protein Not tested PAPI-1 Protein 2e-141 51
pph99 CAI36140.1 predicted HD-superfamily hydrolase Not tested PPHGI-1 Protein 5e-124 50
EXA2 ABD94612.1 conserved hypothetical protein Not tested ExoU island A Protein 5e-142 50