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Name : Alide_4029 (Alide_4029) Accession : YP_004128622.1 Strain : Alicycliphilus denitrificans BC Genome accession: NC_014910 Putative virulence/resistance : Virulence Product : DNA repair protein radc Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 4201440 - 4201934 bp Length : 495 bp Strand : + Note : KEGG: bpt:Bpet1083 DNA repair protein RadC-like protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC DNA sequence : ATGTCTTTCGCCGTCAATGACTCCTGCCTGGAGTCGCTTTCCGCCATCGCTGCCCAACACGAGGACTGGATCATCCAGCA AGCCATCGTGCTGCTGGAGAGACGGGTCTTCAAAGCTGGACCGTGCCTCAGCCAACCGGCCGCTGTACGGGACTACCTGC GTCTGAAACTGGTCGCTGAGCCCAATGAGATATTCGCCGCTGTGTTCCTGGACAGCCTGCACCAGGTGCTGGCCTACGAG CCGCTGTTCAGGGGCACGATCAACGCGACTTCGGTCTATCCGCGTGTCGTCGTGCAGCGTGTGCTGGAGTTGAATGCCGC CGCGGTGGTCTTCGCCCACCAGCATCCTTCGGGCGTCTCCGAGCCGTCCAGCGCGGATCGCATGCTGACCCAGCAACTGC AAGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAA TCCGGCCTGCTGTAG Protein sequence : MSFAVNDSCLESLSAIAAQHEDWIIQQAIVLLERRVFKAGPCLSQPAAVRDYLRLKLVAEPNEIFAAVFLDSLHQVLAYE PLFRGTINATSVYPRVVVQRVLELNAAAVVFAHQHPSGVSEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE SGLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| radC | AAN62140.1 | putative DNA repair protein RadC | Not tested | PAGI-2(C) | Protein | 3e-63 | 93 |
| radC | AAN62275.1 | putative DNA repair protein RadC | Not tested | PAGI-3(SG) | Protein | 6e-36 | 61 |
| VC0510 | NP_230161.1 | DNA repair protein RadC-like protein | Not tested | VSP-2 | Protein | 7e-24 | 50 |
| VC1786 | NP_231421.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 1e-25 | 49 |
| VC0395_A1383 | YP_001217326.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 1e-25 | 49 |
| ECO103_3589 | YP_003223446.1 | radC-like protein YeeS | Not tested | LEE | Protein | 1e-20 | 49 |
| VPI2_0034 | ACA01849.1 | DNA repair protein RadC | Not tested | VPI-2 | Protein | 6e-26 | 49 |
| unnamed | AAK00479.1 | unknown | Not tested | SHI-1 | Protein | 1e-20 | 48 |
| unnamed | CAD42098.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 2e-20 | 48 |
| yeeS | CAE85201.1 | YeeS protein | Not tested | PAI V 536 | Protein | 1e-20 | 48 |
| yeeS | AAZ04458.1 | putative RadC-like protein | Not tested | PAI I APEC-O1 | Protein | 4e-21 | 47 |
| yeeS | YP_854323.1 | radC-like protein YeeS | Not tested | PAI I APEC-O1 | Protein | 6e-21 | 47 |
| c5152 | NP_757000.1 | radC-like protein yeeS | Not tested | PAI II CFT073 | Protein | 6e-21 | 47 |
| Z1657 | NP_287160.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 2e-19 | 47 |
| Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 2e-20 | 47 |
| z1217 | CAD33787.1 | Z1217 protein | Not tested | PAI I 536 | Protein | 2e-20 | 47 |
| unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 2e-20 | 47 |
| yeeS | ADD91702.1 | YeeS | Not tested | PAI-I AL862 | Protein | 1e-20 | 47 |
| yeeS | CAI43846.1 | YeeS protein | Not tested | LEE | Protein | 1e-20 | 47 |
| yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 1e-20 | 47 |
| aec73 | AAW51756.1 | Aec73 | Not tested | AGI-3 | Protein | 1e-20 | 47 |
| unnamed | CAD66203.1 | hypothetical protein | Not tested | PAI III 536 | Protein | 1e-21 | 46 |
| yeeS | NP_838484.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 1e-20 | 46 |
| yeeS | NP_708770.1 | RADC family DNA repair protein | Not tested | SHI-1 | Protein | 1e-20 | 46 |
| unnamed | AAL67345.1 | intergenic-region protein | Not tested | PAI II CFT073 | Protein | 7e-21 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG1119 | Protein | 3e-26 | 49 |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG1617 | Protein | 7e-21 | 48 |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG1528 | Protein | 6e-21 | 47 |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG1066 | Protein | 6e-21 | 47 |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG1678 | Protein | 6e-22 | 46 |
| Alide_4029 | YP_004128622.1 | DNA repair protein radc | VFG0660 | Protein | 3e-21 | 46 |
