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Name : Alide_4011 (Alide_4011) Accession : YP_004128604.1 Strain : Alicycliphilus denitrificans BC Genome accession: NC_014910 Putative virulence/resistance : Unknown Product : dead-like helicase Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 4184163 - 4186442 bp Length : 2280 bp Strand : + Note : SMART: DEAD-like helicase; KEGG: rme:Rmet_2330 helicase-like protein DNA sequence : ATGTCCCTCGATCTCGAAACCACTACCGCTGAAGCCACGCCCGTGCAGGGCGAACTGCTCGACGCGGAATCCAACCCTCT GACCCTGAGCCTTCAGGATTTCGTCGGCGAGTTCGGCGACGAACTGCTCGACGCCCTCAACAGCGCCAATCCGCCGGTCT ATACCGGCCAACCGCAGGCGCACCGGCAAGTCATCGTCGCCAGCCTCAAGCGCAAGCTGTTCCCGGCCCAGGCCGAAGTC GTCCACGCTGCTGCCGAACTGCTGATCGACCGTGGCGAACGCGCCGCGATCGTCAACGGCGAGATGGGCTGCGGCAAGAC GACCGTCGGCATCGCCACGGCCGCCGTCCTCAACGCCGAAGGCTACCGCCGCACCCTGGTGCTTTCGCCACCGCACCTTG TTTACAAGTGGCGGCGCGAGATCCAGGAGACGGTAGCGGGCGCCAAAGTGTGGGTGCTCAACGGGCCGGATACGCTCGTC AAGCTCATCAAGCTGCGTGAGCAGTTGGGTGTGCAGCCCACGGGTCAGGAGTTCTTCGTCCTGGGCCGCGTGAGGATGCG GATGGGCTTCCACTGGAAGCCCGTCTTCACCACGCGGCGCACCCGCCACGGCGACGTGGCAGCGTGCCCGGACTGCGGCA CGGTCATCACCGACCTCGACGGCGAGCCGGTCAACCCGGTCGCGCTCGAAGCCGAGGAGTACCGCAGGAAGTGTGGCCAT TGCGCTGCGCCCCTGTGGACGCTGATCCGCCCGAGAAGCCTGTCCGGCAGCGACCAATCCTCGGCCGTCCTCAAAGCCTT GAAGCGCATCCCGACCATCGGGGAAATCACCGCGCAGAAGCTCATGAAGCGCTTCGGTGATGGTTTCCTTGCCTCGATGT TGGGGGACAACGTGCATGAGTTCATCAACCTCATGGACGGCAACGGCGAGCTGGTGTTTTCCGACCGTCAGGCCACGCGC ATGGAACGTGCGATGGCCAGCATGGAGTTTGGCTTCGGTGAGGGCGGCTACCAACCGTCCGAGTTTATCAAGAGATACCT TCCGCAAGGCACGTTCGACCTGCTCGTCGCCGACGAGGCCCATGAGTACAAGAACGGTGGCAGTGCCCAAGGCCAGGCCA TGGGCGTGCTGGCGGCGAAGGCTCGCAAGACCTTGCTGCTGACCGGCACGCTGATGGGCGGCTATGGTGATGATCTCTTT CACCTGCTGTTCCGAGCCCTTCCGGGGCGGATGATCGAAGACGGCTACCGCCCGACCACGAGCGGCAGCATGACCTCGGC CGCGATGGCGTTCATGCGCGATCACGGGGTCTTGAAGGACATCTATTCCGAGAGCACCGGCACGGCGCACAAGACGGCCA AGGGCACCAAGGTATCGGTGCGCACGGTCAAGGCCCCGGGCTTCGGCCCCAAGGGCGTACTTCGTTGCATCCTGCCGTTC ACGATCTTCCTCAAGCTCAAGGACATCGGCGGCAACGTCCTGCCGCCGTATGACGAGGAGTTCCGCGAAGTCGCGATGGA CACGGCGCAAGCCGCGGCCTACCGCGATCTGGCGGGTCGGCTGACCGCGGAGCTGAAACAGGCTCTGGCGCGACGCGATA CGACCTTGCTGGGTGTGGTCCTCAACGTGCTGCTGGCCTGGCCGGATTGCTGCTTCCGGTCGGAGACCGTGGTGCATCCG CGCACGCGCAACACCCTGGCGTTCGTCCCGGCTCAGTTCAACGAGTTCGAGATCAGCCCCAAGGAGCGTGAGCTGATCGA CATCTGCAAAGAGGAGAAGGCGCAGGGGCGCAAGGTCCTCGCCTACACGGTCTATACCGGCACGCGCGACACCACGTCGC GCCTGAAGGTGCTGCTGGAGCAGGAAGGTTTTCGGGTGGCAGTGCTGCGCGCAAGCGTGGATGCCAGTCGTCGCGAGGAC TGGATCGCCGAGCAACTGGACCGTGGCATCGACGTGCTCATCACCAATCCCGAATTGGTCAAGACGGGATTGGACCTGTT GGACTTCCCGACGATTGTGTTCATGCAGTCTGGCTACAACGTCTATAGCCTTCAACAGGCGGCACGCCGCTCCTGGCGCA TCGGGCAGAAACAGCACGTGCGCGTGATCTACCTCGGCTACGCTGCCACTTCGCAGATGACCTGCCTGGAGCTGATGGCC AAGAAGATCATGGTTTCGCAGTCCACCTCGGGCGACGTGCCCGAATCGGGGCTCGATGTCCTGAACCAGGACGGCGATTC CGTCGAGGTCGCACTGGCCCGGCAGCTTGTCGCCGCATGA Protein sequence : MSLDLETTTAEATPVQGELLDAESNPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQVIVASLKRKLFPAQAEV VHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLV KLIKLREQLGVQPTGQEFFVLGRVRMRMGFHWKPVFTTRRTRHGDVAACPDCGTVITDLDGEPVNPVALEAEEYRRKCGH CAAPLWTLIRPRSLSGSDQSSAVLKALKRIPTIGEITAQKLMKRFGDGFLASMLGDNVHEFINLMDGNGELVFSDRQATR MERAMASMEFGFGEGGYQPSEFIKRYLPQGTFDLLVADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGGYGDDLF HLLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIYSESTGTAHKTAKGTKVSVRTVKAPGFGPKGVLRCILPF TIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDLAGRLTAELKQALARRDTTLLGVVLNVLLAWPDCCFRSETVVHP RTRNTLAFVPAQFNEFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRRED WIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQKQHVRVIYLGYAATSQMTCLELMA KKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 98 |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 88 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 71 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 71 |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 70 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 1e-176 | 50 |
