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Name : Alide_4006 (Alide_4006) Accession : YP_004128599.1 Strain : Alicycliphilus denitrificans BC Genome accession: NC_014910 Putative virulence/resistance : Unknown Product : integrase catalytic region protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 4180109 - 4181635 bp Length : 1527 bp Strand : - Note : PFAM: Integrase catalytic region; regulatory protein MerR; KEGG: ctt:CtCNB1_2459 IstA DNA sequence : GTGATAGACGTGGCAACACTGAGTGTCATCAGGCGCTGGGCCCTGCGAGAGCAGCTGTCCATCCGAGAGATCGCCCGCCG CACGGGCCTCTCGCGCAACACCATCCGCAAGTACCTGCGCGCAGGCGAGGCCGAGCCGCACTATGCCAAGCGGGTCAGCC CTTCCAAGCTCGATCCCTTTGCCTTGAAGCTCTCGGGCTGGCTCAAGACGGAAGCTGGCCGATCCCGTAAGCAGCGGCGT ACCGTCAAGCAGATATACGCCGATCTGCAGGCGCTGGGCTATACCGGCTCCTACAACCGGGTCGCGGCCTTTGTCCGCCT CTGGCAAGAACAACGCCTGGTGGCCCAGCAGACCACCGGCCGCGGCACCTTTGTGCCTTTGGCCTTCGGCCCCGGCGAGG CGTTCCAATTCGATTGGAGCGAGGACTGGGCAGTGCTCGCAGGTGTGCGCACCAAGCTGCAGGTGGCTCACTTCAAACTC AGTCACAGCCGGGCGTTCTACCTGCGTGCCTATCTTCTGCAGACGCACGAGATGCTGTTCGATGCCCACAACCATGCGTT CGTCGTGCTGGGCGGTGTGCCCCGCCGAGGCATCTACGACAACATGCGCACCGCCATAGACCGCGTGCGCCGGGGCAAGG AGAGAGATGTCAACGCACGCTTTGCTGCCATGGTCAGCCACTTCCTGTTCGAGGCAGAGTTCTGCAACCCGGCCTCTGGC TGGGAGAAGGGCCAGGTGGAGAAGAACGTGCGCGATGCCCGCCACCGCCTGTGGCAGGTGGTGCCGCCATTCCCGAGCCT GCCCGATCTGAATGCCTGGCTTGAGGAGCGCTGTGTGGCCCTGTGGCACGAGATCGAGCATGGCAAGCTGGCTGGCACCG TCGCGGACGTCTGGGCCGAGGAGCGGGCAGCCTTGATGCCTGTGCCCCGGCCCTTCGATGGCTTTGTGGAGCACACCAAG CGCGTCTCACCCACCTGCTTGGTCCACTTCGAGCGCAATCGCTACAGCGTGCCAGCGCCGTATGCCAACCGGCCTGTGAG CCTGCGGGTCTACGCGGACCGCCTGGTGGTCGCTGCCGAAGGCCAGATCATCTGTGAACACCAGCGCCTGATCGAGCGCA ACCACCATGGCGCTGGGCAGACCGTCTATGACTGGCGCCACTACCTGGCGGTGCTGCAGCGCAAGCCCGGGGCATTGCGC AATGGCGCTCCCTTCCAGGAACTGCCAGTGGCCTTCAAACGGCTGCAGACCGCCCTCTTGATGCAGCCAGGCGGCGACAG AGAGATGGTGGAGGTGCTGGCACTGGTGCTGCATCACGACGAGCAGGCCGTGCTCGCCGCAGTGGAACTGGCCCTGGAGT CTGGGGCTGCCAGCAAGACCCATATCCTGAACGTGCTGCACCGGCTGCTGGACGGCAAGCCCGCTCCAGCACCGGTCACC TCCCCCCAGGCCCTCAAGCTGGCGATGGAACCCCAGGCCAACGTGCTGCGCTATGACCAATTGAGGGAGGTGCGCTATGC GTCATGA Protein sequence : MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLRAGEAEPHYAKRVSPSKLDPFALKLSGWLKTEAGRSRKQRR TVKQIYADLQALGYTGSYNRVAAFVRLWQEQRLVAQQTTGRGTFVPLAFGPGEAFQFDWSEDWAVLAGVRTKLQVAHFKL SHSRAFYLRAYLLQTHEMLFDAHNHAFVVLGGVPRRGIYDNMRTAIDRVRRGKERDVNARFAAMVSHFLFEAEFCNPASG WEKGQVEKNVRDARHRLWQVVPPFPSLPDLNAWLEERCVALWHEIEHGKLAGTVADVWAEERAALMPVPRPFDGFVEHTK RVSPTCLVHFERNRYSVPAPYANRPVSLRVYADRLVVAAEGQIICEHQRLIERNHHGAGQTVYDWRHYLAVLQRKPGALR NGAPFQELPVAFKRLQTALLMQPGGDREMVEVLALVLHHDEQAVLAAVELALESGAASKTHILNVLHRLLDGKPAPAPVT SPQALKLAMEPQANVLRYDQLREVRYAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EC042_4098 | YP_006098381.1 | transposase | Not tested | Tn2411 | Protein | 8e-153 | 64 |
| unnamed | AAN85144.1 | unknown | Not tested | Hrp PAI | Protein | 4e-108 | 50 |
| istA | AAN62228.1 | putative transposase | Not tested | PAGI-3(SG) | Protein | 8e-91 | 44 |
