Gene Information

Name : Alide_3847 (Alide_3847)
Accession : YP_004128442.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein flip
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4015567 - 4016322 bp
Length : 756 bp
Strand : -
Note : KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence :

ATGCGTAGATGCATACGCCTGACGGCGGGCCTGGCCTGCCTGCTGATCGCGGGCGCGGCCCTTGGGCAGCAGCAGGGCGG
CGCCGGAACGCTGCCGCTCGTGGTCGGCTCGGGCGCGGGCGGGACCAGCTATTCGGTGCCGATACAGACGCTGCTGTTCT
TCACCGCGCTGTCCTTCCTGCCGGCGGTGCTGCTCATGATGACGGGCTTCACGCGCATCGTCATCGTGCTGTCGCTGCTG
CGCCAGGCCATAGGCACGCAGCAGGCGCCGCCCAACCAGGTGGTGGTGGGCCTGTCGCTGTTCCTCACGCTGTTCGTCAT
GGGGCCGACGCTGGACAAGGTGTACCAGGAGGCCTACGTGCCCTACACCACCAACGCGCTGTCGTTCGAGCAGGCGCTCG
CCAAGGCCGAGGCCCCCATGCGCGGCTTCATGCTCAAGCAGACGCGCCAGTCCGACTTCACGCTGTTCGCGCGCCTGGCC
AAGCTGGACGAGGGCGTGACGGCCGAGACCGCGCCGCTGCGCGTGCTGGTGCCGGCCTTCGTGACCAGCGAGCTCAAGAC
GGCGTTCCAGATCGGCTTCATGGTCTTCATCCCGTTCCTGATCATCGACATGGTGGTGTCCAGCGTGCTCATGTCGCTCG
GGATGATGATGCTCTCGCCGGTGCTGGTGGCGCTGCCGTTCAAGCTCATGCTGTTCGTGCTGGCCGATGGCTGGAACCTG
CTCATCGGCTCGCTGGCCGCGAGCTTTGCCACGTGA

Protein sequence :

MRRCIRLTAGLACLLIAGAALGQQQGGAGTLPLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLL
RQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFTLFARLA
KLDEGVTAETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNL
LIGSLAASFAT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	8e-25	42
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	8e-25	42
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	6e-25	42
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	2e-25	41
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	2e-25	41
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	2e-25	41
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	3e-24	41
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	3e-24	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	1e-24	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	1e-24	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	9e-24	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	2e-24	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	2e-24	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	2e-24	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	2e-24	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	2e-24	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	2e-24	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	2e-24	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	2e-24	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG2338	Protein	1e-60	66
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG2494	Protein	4e-61	66
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG1259	Protein	1e-56	62
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG2016	Protein	5e-50	56
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG0519	Protein	3e-25	42
Alide_3847	YP_004128442.1	flagellar biosynthetic protein flip	VFG0827	Protein	8e-25	41