Gene Information

Name : Alide_3789 (Alide_3789)
Accession : YP_004128386.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Resistance
Product : sss sodium solute transporter superfamily
Function : -
COG functional category : R : General function prediction only
COG ID : COG4147
EC number : -
Position : 3945538 - 3947274 bp
Length : 1737 bp
Strand : +
Note : KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter

DNA sequence :
ATGAAGCGCATACAGATCGCAGCCAGCAGCACGCTGGCCCTGGCCAGCCTGTGGGCCGCCAACGCAGCCCACGCCGCCGG
TGGCGACCTGGGCCAGGCCGCCAAGCAGGAAACCAACTGGACGGCCATCGTCATGTTCGCCATCTTCGTGGCCGGCACGC
TGTGGATCACGAAGTGGGCCGCATCCAAGACCCGCTCGGCGGCGGACTTTTACACCGCTGGCGGCGGCATCACGGGCTTC
CAGAACGGCCTGGCGATCGCCGGCGACTACATGTCCGCAGCCTCGTTCCTGGGCATCTCGGCGGCCGTGATGGCTTCGGG
CTACGACGGGCTGATCTACTCCATCGGCTTCCTCGTGGGCTGGCCCGTCATCACCTTCCTGATGGCCGACCGCCTGCGCA
ACCTGGGCAAGTTCACCTTCGCCGACGTGGCCGGCTACCGCTTCGCGCAGGCGCCCATCCGCATGTTCGCGGCCTCGGGC
ACGCTGATCGTGGTGGCCTTCTACCTGATCGCGCAGATGGTCGGCGCCGGCCAGCTCATCAAGCTGCTGTTCGGCCTGGA
GTACTGGATGGCGGTGGTCATCGTCGGCGCGCTGATGATGGTCTACGTGCTGTTCGGCGGCATGACGGCCACCACCTGGG
TGCAGATCATCAAGGCCTGCCTGCTGCTCGCCGGCGTGACCTTCATGGCCTTCATGGTGCTGGCCAACTACGGCTTCAGC
CCCGAGGCGCTGTTCGCCAAGGGCGTGGAGGTGCGCACGCAGATCGCCGCCAACGCGGGCAAGACGCCCGAAGAGGCGGC
CAGGGCGGGCCTGTCCATCATGGGCCCGGGCGGCTTCATCAAGGATCCCATCTCGGCCATCTCGTTCGGTATGGCGCTGA
TGTTCGGCACGGCCGGTCTGCCCCACATCCTGATGCGCTTCTTCACCGTGCCCAACGCCAAGGAGGCGCGCAAGTCCGTG
GGCTGGGCCACGGTGTGGATCGGCTACTTCTACATCCTGATCTTCATCATCGGCTTCGGCGCCATCACCATGGTGCTCAC
GAACCCCGAGATGTCCGACACCGTCAAGGGCGTGATCAAGGGCGGCGCGGGCACGGCCAACATGGCGGCCGTGCTGGTGG
CCAAGAGCGTGGGCGGCAACATCTTCTACGGCTTCATCTCCGCCGTGGCGTTCGCCACCATCCTGGCCGTGGTCGCGGGC
CTGACGCTGTCGGGCGCCTCGGCCGTGTCGCACGACCTGTACGCCACCGTCATCAAGAACGGCAAGGCCGACAGCGCCGC
CGAGCTCAAGGTCTCGCGCATCACCACCCTGGCGCTGGGCGTGATCGCCGTGCTGCTGGGCATCGCGTTCGAGAAGCAGA
ACATCGCCTTCATGGTGTCGCTGGCCTTCGCGGTCGCGGCCTCGGCCAACTTCCCGGCGCTGATCCTGTCCATCCTGTGG
AAGGGCTGCACCACGCGCGGCGCGGTGATCGGCGGCTTCCTGGGCCTGATCTCCTCGGTGGGCCTGACCATCGTGTCGCC
CTCGGTGTGGGAAGCCACGCTGGGCAACCCGGCCGGGTCGGCGCTGTTCCCCTACTCCTCGCCGGCCCTGTTCTCCATGG
TGATCGGCTTCGTGGGCGTGTGGCTGTTCTCGATCACCGACGGCAGCGCGCGCGCGGCCAAGGAGCGTGAGGCCTTCGCC
GCGCAGCAGGTGCGCTCCGAGACCGGCCTGGGCGCGTCCGGCGCATCGGGCCACTGA

Protein sequence :
MKRIQIAASSTLALASLWAANAAHAAGGDLGQAAKQETNWTAIVMFAIFVAGTLWITKWAASKTRSAADFYTAGGGITGF
QNGLAIAGDYMSAASFLGISAAVMASGYDGLIYSIGFLVGWPVITFLMADRLRNLGKFTFADVAGYRFAQAPIRMFAASG
TLIVVAFYLIAQMVGAGQLIKLLFGLEYWMAVVIVGALMMVYVLFGGMTATTWVQIIKACLLLAGVTFMAFMVLANYGFS
PEALFAKGVEVRTQIAANAGKTPEEAARAGLSIMGPGGFIKDPISAISFGMALMFGTAGLPHILMRFFTVPNAKEARKSV
GWATVWIGYFYILIFIIGFGAITMVLTNPEMSDTVKGVIKGGAGTANMAAVLVAKSVGGNIFYGFISAVAFATILAVVAG
LTLSGASAVSHDLYATVIKNGKADSAAELKVSRITTLALGVIAVLLGIAFEKQNIAFMVSLAFAVAASANFPALILSILW
KGCTTRGAVIGGFLGLISSVGLTIVSPSVWEATLGNPAGSALFPYSSPALFSMVIGFVGVWLFSITDGSARAAKEREAFA
AQQVRSETGLGASGASGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK01502.1 putative amino acid transport protein Not tested PAGI-1 Protein 3e-103 54
cur_1523 YP_001800917.1 transporter Not tested Not named Protein 2e-65 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_3789 YP_004128386.1 sss sodium solute transporter superfamily BAC0564 Protein 1e-132 64
Alide_3789 YP_004128386.1 sss sodium solute transporter superfamily BAC0570 Protein 3e-119 60