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Name : Alide_2714 (Alide_2714) Accession : YP_004127332.1 Strain : Alicycliphilus denitrificans BC Genome accession: NC_014910 Putative virulence/resistance : Unknown Product : DNA topoisomerase iii Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2806679 - 2808694 bp Length : 2016 bp Strand : - Note : TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; KEGG: ajs:Ajs_2233 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA sequence : ATGCGCGTGTTCCTGTGCGAGAAGCCGTCCCAGGGCAAGGACATCGCCCGTGTGCTGGGCGCCGGCCAACGCAGCAACGG CTGCTACAGCGGTGCCGGTGTTGTCGTGACCTGGTGCATTGGTCATCTGGTCGAGGCGGTTCCGCCCGAAGGCTACGGCG AGCAGTACAAGCGCTGGGCCATCGAGCAGCTGCCCATTGTTCCTGAGCGTTGGCGTGTCGAGCCCAAGGTGGCGACCGCA GCGCAATTCAAGGTCGTGCAGCAGCTCGTCGCCAAGGCGGGCGAGCTAGTGATTGCGACCGACGCCGACCGCGAGGGCGA GATGATCGCCCGCGAGATCATCGACCTATGCGGCTACCGCGGGCCGATTCAGCGCCTGTGGCTGTCGGCGCTCAACGATG CGTCGATCCGTAAAGCGCTGGGTGCGCTCAAGCCGTCCGCCGAGACGCTGCCGCTGTATTTCTCCGCACTCGCCCGATCG CGCGCCGACTGGCTGATCGGGATGAACCTGAGCCGCTTGTTCACACTGCTGGGGCGCCAGGCCGGCTATACCGGCGTGCT GTCGGTGGGGCGCGTGCAGACGCCGACGCTGAAACTGGTGGTGGACCGCGATCGCGAGATCGCGCGCTTCGTCTCCGTGC CGTATTGGGCCGCGGACGTGCTGCTATCCCATGCCGGCCAGTCCTTCACCGCGAGCTGGATACCGCCCGAAGGCAGCACC GATGCAGCAGGTCGTTGCCTTCAGCAGCCGGTGGCGCAGCAGGCGGTGGATCGCATTCGCGCCGCACGCGATGCGCAGGT CGTGTCGGTGGACACCGAGCGCGTGCGCGAGGCACCGCCGCTGCCGTTCGACCTGGGCACCTTGCAGGAAGTGTGTTCGC GTCAGCTCGGCCTCGATGTGCAGGAGACGCTGGACATCGCGCAGGCGCTGTACGAGACGCACAAGGCGACGACCTATCCG CGCAGCGACTCGGGATACCTGCCCGAAAGCATGCTCGCGGAAGTGCCGGCGGTGCTCGATGCACTGCTCGCCACCGAACC CAGCCTGCGGCCCTTGCTCGGCCAGCTCGACCGCAACCAGCGTTCGCGCGCCTGGAACGACGGCAAGGTGACGGCGCACC ACGGCATCATCCCCACGCTGGAGCCGGCCAAGCTCTTGGCCATGTCGGAGAAAGAACTGGCGGTCTACCAGCTGATCCGC GGGCGCTATCTCGCGCAGTTTCTTCCACACCATGAGTTCGACCGCACGGTGACGCAGCTCGCTTGCGGCGGCCAGTCGCT CGTGGCGGTGGGCAAGCAGATCGCCGTGATCGGCTGGCGCCAGGTACTGGCGACACCGGAGCCGGACGCTGCCGATGGCG AGGAAGCGCAGCGCAGCCAGGTGCTGCCGCCACTGGCGAGCGGATCGCGCTGCGGGGTCGAGCAGGTCGAGCTGAAGGCG CTGAGAACGCTGCCGCCGAAGCCCTACACCCAGGGCGAACTGGTCAAGGTGATGAAGGGCGTGGCCAAGCTAGTGGACGA CCCGCGTCTGAAGCAGAAGCTGAAGGAGACGACGGGCATCGGCACCGAGGCCACGCGCGCCAGCACGATCAAGGGCCTGC TCGATCGCGGCTACCTGCTGAAGAAGGGCCGCGCCATCCGCGCGTCGGATGCGGCCTTCACGCTCATCGACGCCGTGCCG GCGGCCATCGCCGATCCCGGCATGACCGCCATCTGGGAGCAGGCGCTCGACATGATCGAGGCCGGCCAGATGACGCTGGA CACCTTCATCGCCAAGCAATCCACCTGGGTGGCCCAGCTCGTGCAGCAGCATCGGGGCGCGACGCTTTCCATCGCGCTGC CGCCGTCGCCGCCCTGCCCGCAGTGCGGCGCGCCGATGCGCCAGCGTACCGGCAAGAGCGGCGCGTTCTGGTCATGCAGC CGTTATCCAGACTGCAAGGGCACGCTGCCGGTCGAATCCTCGGCAAGCAAGCGCGGTGCGCCACGCAAGCGGCGCACAGT ACCCAAGGCGTCCTGA Protein sequence : MRVFLCEKPSQGKDIARVLGAGQRSNGCYSGAGVVVTWCIGHLVEAVPPEGYGEQYKRWAIEQLPIVPERWRVEPKVATA AQFKVVQQLVAKAGELVIATDADREGEMIAREIIDLCGYRGPIQRLWLSALNDASIRKALGALKPSAETLPLYFSALARS RADWLIGMNLSRLFTLLGRQAGYTGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAADVLLSHAGQSFTASWIPPEGST DAAGRCLQQPVAQQAVDRIRAARDAQVVSVDTERVREAPPLPFDLGTLQEVCSRQLGLDVQETLDIAQALYETHKATTYP RSDSGYLPESMLAEVPAVLDALLATEPSLRPLLGQLDRNQRSRAWNDGKVTAHHGIIPTLEPAKLLAMSEKELAVYQLIR GRYLAQFLPHHEFDRTVTQLACGGQSLVAVGKQIAVIGWRQVLATPEPDAADGEEAQRSQVLPPLASGSRCGVEQVELKA LRTLPPKPYTQGELVKVMKGVAKLVDDPRLKQKLKETTGIGTEATRASTIKGLLDRGYLLKKGRAIRASDAAFTLIDAVP AAIADPGMTAIWEQALDMIEAGQMTLDTFIAKQSTWVAQLVQQHRGATLSIALPPSPPCPQCGAPMRQRTGKSGAFWSCS RYPDCKGTLPVESSASKRGAPRKRRTVPKAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 79 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 77 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-164 | 52 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-159 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-159 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-159 | 50 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-162 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-119 | 41 |
